Scaffold Ga0104988_10768

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10768
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 27441
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (43.64%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003661	Metagenome / Metatranscriptome	474	Y
F010026	Metagenome / Metatranscriptome	309	Y
F041151	Metagenome	160	Y
F045713	Metagenome / Metatranscriptome	152	Y
F050358	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1076819	F041151	N/A	MSTAQDLINQLLAIRSEKEDLEAREAFLRDEIEGAIALGELDAHQVDDNTYEFDNARYIRCQRNTYKLSKEAENAIRTIKERDIDAGLAQRNVSVFYQLRMIP*
Ga0104988_1076832	F050358	N/A	MGYSWFMGKQPTTFQIMQTLETQLAFAKQLLSEAQTEYQHCFARGDWSECSKAKRKVAKQMKQVQYLVAQKFAAC*
Ga0104988_107685	F010026	GGA	MAVKSKVGAKTIQHTPGKPKKTRQGQGQHSLPNHGRKKTRGQGR*
Ga0104988_1076851	F045713	GGA	MNGRIWEGGCTYLKCADGMIEGRFIFPTPNNPEVLGALMSRLASGIEVIICTEEDDDDD*
Ga0104988_107688	F003661	N/A	MDPTTAAAIAIIVAAGSEIIAILPIKENSWVQLIVKALKVLFPKR*