Scaffold Ga0104988

Basic Information
Taxon OID	3300007735 Open in IMG/M
Scaffold ID	Ga0104988_10759 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007735 Open in IMG/M

Scaffold ID

Ga0104988_10759 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	26584
Total Scaffold Genes	38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (21.05%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (33.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

26584

Total Scaffold Genes

38 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (21.05%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (33.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022633	Metagenome	213	N
F036299	Metagenome	170	N
F043476	Metagenome	156	N
F067661	Metagenome	125	Y
F075872	Metagenome	118	N
F078327	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1075912	F078327	N/A	MTNLLLIIPFLLSMVYMMADFHDRWWWYISFCALPIIYLCIFAYLKKTNELNKEDDTYTF
Ga0104988_1075916	F036299	GGA	VIRTSAIVHTDRQVVTAGSLTELTLPDLCDSAGLIRRFTLRDSAKTSVLSVANSGSGIVIRLRRDTVVERLILRDTTIVERTVVVQPKKRKSRWPILLVGAILGLLASVVLFARLR*
Ga0104988_1075919	F022633	N/A	MIDFLKSIGINLGLTIAGFFGALLLAPKMKNWKMQLIAVLSGTLSATYIAPVIIGILNIKAPNIEYGLAFIVGFSGVKITEVLEVRIMKLLKSTPPNQ*
Ga0104988_1075920	F067661	N/A	MPTFRKYAFPNEATFTALPVPQGFAVPLGIIQGTYCVDILWDAKPNAAYLPYECWPTPVGVHTFLGWDEQYGKDYTERDDLNNTLNED*
Ga0104988_107594	F075872	N/A	MTRERSFKHYYPIPHNGGFIEPIIHIEYEAHDWGNEHAGSIDVIDAWVSSFKYIKLDITTPEVKVGEVPPVLFEWKKAVMTDSEAESAQAWLDQTPLDFFHDAAFANECEEWNEPPLSLQP*
Ga0104988_107598	F043476	AGGAGG	MLTLPTNIDRAEIEAFVNHVTAEVMDGHVDPLSVHIRCKAVVKALEAIIERTEELAKDTAATYGKGEFKFHGASVQLREPRDMPDFNHDPVCVELADRLKSRQELIKTAFKMASTAAIVDPNTGEVVPVVPVKPAKTTLTVTFR*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104988_10759

Overview

Ecosystem & Geography

Associated Families

Sequences