Scaffold Ga0104988_10743

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10743
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 25853
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (60.87%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005846	Metagenome	388	Y
F007164	Metagenome / Metatranscriptome	356	Y
F010463	Metagenome	303	N
F011284	Metagenome	292	N
F023585	Metagenome	209	Y
F023833	Metagenome	208	Y
F024265	Metagenome	206	N
F033350	Metagenome	177	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1074326	F011284	AGCAG	MTSEQGVEKATQKHFTKKHELHLTTLQVAAVESMEKKYKRGVEENQGTKLWEMPTARLVEEAIAEATDQMVYLLSLRQQMHIVMELARDGCTDETLTNPRARECCHLIYTTLTGQSKPQI
Ga0104988_1074330	F005846	N/A	MTSFPLPARPVGSAVPANHDEFSDGFSIEGKLNGWRGWFDQETKQGYNRHGKFASNHNLMADMILGAGIKSRFVDCEIMGQRTKTGKGTIVVMDAFDPANPKPYAERMKEIEHLEAVTFDVPQNKLLRFVRLAHHKINSIWEEMNFQNNKAGEVVWEGFVMKALDDGKYPFITNPNYCSPAWQKQRIRW*
Ga0104988_1074335	F023833	N/A	VQDIINDAMRKAASLERERCAELVQKLADGTEDQVIQDILNEVVVALRRLSDER*
Ga0104988_1074336	F033350	GGAGG	MSVDVEVPRVKWSMLEWKTIEEKPKNDEKVLMDIGGEVVVGRFVDGSFVSRSWGHSENDVRLWASWPKAPKW*
Ga0104988_1074337	F023585	AGGA	MSVKRLKLVDEFHGIVSRRLKELFKDFDHAKRENYKDIISHLDYSHRITKELLDRAKKYQKRDMEDKKK*
Ga0104988_1074339	F010463	N/A	VIAHHQELVLAATIHRVKMCEDKLREFEQMVTTLTSTMAQNRAELASKGLEKFVLGVTTPLDIPKELVPTYGKAGARRNREYSTVKKRWTLWKHQLESGMSMSELAKAWGVHRTTIMFAKSRNFIVRKAKGGSR*
Ga0104988_1074341	F024265	N/A	MNESYVTPESKAQGILSDRYPGKELEKLYATTRNQATIDMLRDAVFTLITNEIPTCTIAEVLKKTHGAIQYHLRYLEGRGKIKRPNKRCHWTEVKRED*
Ga0104988_1074345	F007164	AGGA	MSEKQIGMELQKTVRQLEKAKENAIEQMGQAIGLAADAGDILLSARVEGLDLDTIQEVAGINGEQARRYERVAKARPSLQAPTPGGLKQLALWTGLLPDPIETSNPKAEQAWHSYIIKARQWLARKSVTHWTPAQKTQFLEEARPIVEAYKEAGGEL*