Scaffold Ga0104988_10487

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10487
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 16131
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (79.07%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002707	Metagenome	535	Y
F054866	Metagenome	139	Y
F062759	Metagenome	130	N
F074862	Metagenome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1048724	F074862	GGAGG	MTIEGIIRMAKQAGFADEEIDVCQQILIHFAMLVAEHERNEIIQILEDSTGYVQMDLIRERT*
Ga0104988_1048732	F002707	AGG	MTQIEALTQCLVLALTAPNDQKAQQASELAEQIAHGLTKKQVNQCKQAAIKLWGEQ*
Ga0104988_1048736	F054866	AGG	MKKYTITHGSIAAVQYVTLPDGDKVIVTDARDGSERELPKLPFEVQAAVNRQFEAIFALPYDSRQSFIDNSISFEVEVTE*
Ga0104988_1048740	F062759	AGG	MKSTRSEYLNFFTNWLHYQFPRNADIVRNVLIMREVQNIVDSDSEAVYWGDRDCWTMHDMANKKIQSRAIEGITA*