Scaffold Ga0104988_10440

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10440
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 15261
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (70.37%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003378	Metagenome / Metatranscriptome	490	Y
F019644	Metagenome	228	N
F025023	Metagenome / Metatranscriptome	203	N
F040082	Metagenome	162	N
F041770	Metagenome	159	N
F068828	Metagenome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1044011	F040082	GGAG	MTGDTFAMSQEIIELQTRVSELMVALERVTEQRDNAVDAAESLHQELEACRDRIKSLGGQLDRLRIHLQQGIEL*
Ga0104988_1044015	F025023	AGAAGG	MTDTFEGRMMDVGVDRTCVLQLQSDFDSLRPHQRAMVKKIATECNEYGHSISLDQLKSHRRYQIGRGLVDLIMSDNCDELLITSLCHSIQGVLFKTAGGAIGHLDAACAEQFAVMCRAIRWDEQDIVWNTSTDSFGFPSKEKVGK*
Ga0104988_1044023	F003378	GGAG	MVDEVKIKQNATMAKFFDLGQRLFSLFLANALPAVTTGAVIGISVGKSAIMAGAMACIKVVSALAEASTDGELSSEEIKAAFGKKK*
Ga0104988_104406	F068828	AGGAG	MKQIYINTMLGTTRIDYNEHDDGDIIIIASPGTNIEAVIQEPIECSGINPESIVRFKNTEDVAFEPVWQEEKRRLLYSDLSPNEKYLRDLIGDDAYENYEMQ*
Ga0104988_104408	F019644	GAG	MTMNEDQDPLDDRIKYFIESQVDADNVCTAYVLVATIQNYVTTEQKFFTICPPEQVTSTTIGLLESASAAEKLRIARQLLEND*
Ga0104988_104409	F041770	AGGAG	MKTESVGADILLEAHQLVTGPRNETYGDVVDDYTKVITIFESLTGIKLSIADALLFMVSIKMARLRTNLDRNRLHHDSLLDALGYLGLLNQAYNDLPFPRTVAER*