Scaffold Ga0104988_10399

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10399
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 14621
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (26.32%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006590	Metagenome / Metatranscriptome	369	N
F008815	Metagenome / Metatranscriptome	327	Y
F012574	Metagenome / Metatranscriptome	279	Y
F025030	Metagenome / Metatranscriptome	203	Y
F035767	Metagenome / Metatranscriptome	171	N
F093872	Metagenome / Metatranscriptome	106	N
F101173	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1039910	F035767	N/A	MGYLSAKQINHLKDLQKSNYNGRRSFQGMSLRVVGLADAVIEFAELMEQCTVTERSRVIDSATPIALEVYRSLVPVSSKPHRISTNPFKNKKMEGWEKNDRASMWVQPGNLRKSIIDLSKNLVSYKRAVGAIGPLYKRNTMNRGINSSEGTNGFYAHMVYGSTRAWYNKIVVKARNLSREKVIKTMRDECIFIMQERPKKFWQIS*
Ga0104988_1039916	F012574	AGGA	MYLIEKLKMSIMEILMKKHEYAEQVRQINCTSGYFHRFYELVSDYPRHEDAWQKLEEERGELGLDEKYSTYNSFRKAKKTYMDIRFV*
Ga0104988_1039919	F093872	N/A	MAQKSIKTKLLQGTLEKSRIKTFTPGEIGEPMFNLDAGEQRIYNRIREHLHVHKAGKQVDEIYLSIAARAIGHLLHNAEILSKDGAVMVHPNGARQVSAEWTAFKQGFELFLELSRTLGLDPKSRLTLEYFQDGSGDEEDEIAKLLKMN*
Ga0104988_103992	F008815	N/A	MPNYTERTVLSKPRDFNQVANNAGSGGVVNNNVTETINNVTVTGSAISIFNQEFLATSSNVLTWTQNNGTLPVTNLNASVHVYQNGQKLVDSQYTITAPATITIDSNTHYDGSNYIVFAINII*
Ga0104988_103993	F101173	GAG	MAVRFQTTVYNEKGRKIVVAIKDKVFSGMTYDFDTIGLQLQYDSESQQGQERFTPIIGSRCSLSLLINNNDLQTLLLDIGLAVEGRFTMELTAYEDDNTTVSFKWYGYIVTDLVEFEDVPLSLGYQAQISAIDGLGWLKTLDYKSAVGPYIGQDTVVQHILNCLNQLDFVQDNLVANNLPVLHTIFNWHENTTAYNAASDYSLLTVIQHRAFYHKDTKSNFVYQSCYEVLKKICQSFGARLLFSGNQYWFIQVNEYARTPSTKRYFKYTAFGVQVAGTFTADLTLSNIQTNLPGSDLMRLSGGKWTYYPALKNVVIRYNHFAKQNLLAGVEYNYGTNDTPVITITPTLDASNPDARLSYTGILGFYAQALNPVNFQPFQFVFAVKVASIINSFPLQGFESANWTLGSGWIIDNKILEGTLIGTEAFYTTFTVTSGRKYYVKIKVEINNNGSLRLRLGGVTKTITESGDYEYVILSTNTNTLKLDSISSPGFTGKIKSLQVKQENKYLKRGVTYTNGFNFQLEPATWENSFYEYEFNTETITADAAFVAYKTITFDTLDIPESAEYVWEMRLKQMRNEAGSSIISNFAVSYLLSNNYLEFLPTGAVSGQSDILEYGSDNDDKSSTVFSLDTYIGDGPSKTTDGGLKVLESGTYENSSSWDVSSGQGFNNVTQLLVNEVIRGQLTPKLRMVDMPFQNLSVDNPYLPHKVIEYSSGYYVFERGSFDLKTEIWQGDYFKIELDA*
Ga0104988_103996	F006590	N/A	MKTITIANTTIPIKFGMFVLGTFLRERKLKLSDLSLLGEDLLLALELAFTGVEHGYKAKGEKCPYTLQSFCDLVDTDMGGITRIMEMISNEISPPEDESQKNVVAKAESSHLNTSNAFVSEF*
Ga0104988_103998	F025030	N/A	MKLRLLKEWNGKAPGKVGVFLSEYGEQMIKDGIAELLDESFVVEEMPKKQEVEPAPMYIPIPVPMSYFNDEADEEAINKPKNK*