Scaffold Ga0104988_10309

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10309
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 13308
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (85.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001599	Metagenome / Metatranscriptome	665	Y
F001706	Metagenome / Metatranscriptome	648	Y
F011647	Metagenome / Metatranscriptome	288	Y
F032574	Metagenome	179	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_103091	F032574	N/A	PSMKQTIIDGGYDPTPKTKNDDDSGWDALVCFNGRLYQVSDDYGYMRDDKGLYAIGSGGTLALGALAAMESETKTHAKASGAAKKAINIAIEYNVWCGGTATVKTQFTK*
Ga0104988_1030910	F001706	AGG	MKHWEHHPEPIEGCFGCKGLTLQMNSGDAKRDIPDKKWNSELQAYRDARAQGIQPAGTTRRHVEEAHKASEVLGKAYNADTMPKTKDITPKAATLMKEIGQI*
Ga0104988_1030914	F011647	AGAAG	MSSGQRKRHDGWNKSIMRDGVVVILRKDGSEKVRLDPRTKEVLKGSK*
Ga0104988_1030918	F001599	AGG	MSTKGTKDSIALVWCDNGMVDGKFMQGVADVMLKSGVEFATTLRSQGNQIARQRQTSIDYWYDKTEHEWLLWIDSDVVISPEKFKLLWDNRDAEKRPLITGVYFTTDTPEEPLMAPLPTVFNFVNNGDGGFGLTRVHPLPVNQLMKVDAAGMGFILMHRSIVPKLREIAPDGQLFMEMGRGTKFIGEDIFFFALCDKAEVPLYCHTGATVPHMKRFSFDEHYYRAFFGKPKEEPKSKLVTPNKKIITPR*