Scaffold Ga0104988_10183

Overview

Basic Information

• Taxon OID: 3300007735
• Scaffold ID: Ga0104988_10183
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea ? 2014Oct
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 11515
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (25.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001806	Metagenome / Metatranscriptome	631	Y
F001807	Metagenome / Metatranscriptome	631	Y
F003687	Metagenome / Metatranscriptome	473	Y
F027818	Metagenome	193	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104988_1018320	F027818	N/A	MFSNTIVGNIAHLEVAVHEGREFLAITMYVKDQYDGVCRIKFNNSNGLLTAYNNGTLSVGQQLILGQWDVRINSIRTHYFKDDQLIALKYPEIALTRVRAVIGSAPEAKPVVAQQQPKAEPTLAEIPF*
Ga0104988_1018321	F003687	GGA	MTPKVVERLLTQDARLLARRDSPVIDQDIECDRQAALELFFAWQDGLAEFQELMPFIVILQRKVDLNRALLKYEQEQLMD*
Ga0104988_1018326	F001806	N/A	MDAGTRQKRVEALEAIKNKAVDMAKKGRDSFEVRNFVTEAKKELAYELPDEEAFTKAMNATLAYKAKKGE*
Ga0104988_101837	F001807	N/A	MTILAIKDTFIDGSDVTVTAVVEDMRLLYRATHYEPEEWAPALCSATFQLDEGEQIPLDEDGFCSYLDSLDLYWQLVDTSDYDVD*