NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104986_1954

Scaffold Ga0104986_1954


Overview

Basic Information
Taxon OID3300007734 Open in IMG/M
Scaffold IDGa0104986_1954 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)60849
Total Scaffold Genes99 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)71 (71.72%)
Novel Protein Genes16 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)13 (81.25%)
Associated Families16

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.953056Long. (o)127.81721Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004793Metagenome / Metatranscriptome423Y
F006261Metagenome / Metatranscriptome377Y
F008607Metagenome330Y
F011482Metagenome / Metatranscriptome290Y
F014841Metagenome / Metatranscriptome259Y
F027488Metagenome194N
F029091Metagenome / Metatranscriptome189Y
F041730Metagenome159Y
F042308Metagenome / Metatranscriptome158Y
F053995Metagenome / Metatranscriptome140N
F057363Metagenome / Metatranscriptome136Y
F068570Metagenome124N
F072277Metagenome121Y
F099272Metagenome103Y
F102814Metagenome101N
F103142Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0104986_195416F014841N/AMGEENKKPSLIDDALAEIGRIAFLDPSICTGWVLVSEWMGEGRKEYWTLTLADDDNPDWRHKGLVHHALATWEADDDIGFKDNSDKPKD*
Ga0104986_19542F103142GGAGGMSLDYKEFEWGNRITSDQDSVDRFLHEGLVPQAPSVGDLHGAAEWLATYAAETAEEAQGWANVVAFLILTAESKEKRSALAKAKKKFAEEKGIPVSQVRINRNN*
Ga0104986_19543F072277AGGAGMEVCVKCGVSIGQFEVFPEQVCVKCFAVEFEKEFQSALKIGRFK*
Ga0104986_195436F053995AGGAMALVNRLSKGEVAVGALQVGSNDTVYGIEFGTVEIDPASINATTRGGTTFTLTGAATTDIIIVNPPSTLNDDLIFCGAAVTAADTVTVYLYNPTAGSINQAAATFSYCWIDTTA*
Ga0104986_195439F041730AGGAGMALPSSLSTATIVGTYVDLIGNPVRGSLTFAPQTILKETTQNIIIMPVHIVKTLDATGSFTITLPVTSDTDVAPQPFIYDLTENFSGGRELQIALPLSVAGTTQNLADLLPAVDSATAASYVTTDQYQALLARYTDAEGIRVIVVDAEDYEANALAYATATTTAATEIASFTVKSLLLMGV*
Ga0104986_19544F102814N/AMRERKPMAGTKPRDSQKQRLYDAQRLAGFYDTGEVMTIKQAQKFVNQVLSHKKTKKLFEQYRFQFSTFPSKIVVEAGSGNHATMRSRNWELVRLIRLTKAGRNKFIILHEIAHHITWGRESHGAEFADVLLQFTTRYLGKPNADRLANAFNVKRVRVMTKTKKARVPRKREITSAKLVA*
Ga0104986_195449F008607AGGAGMADAIYSKVAEFMTDTVVFTPKASVDKYNKPTFGASNTNVTATGRLIYDTIKSKDVQGTEVVDIGRFITNGPQTTITVGHRMVVGADTFSINAVDNIADENGAHHTVIRFGR*
Ga0104986_195452F068570GAGMAETQQPMSSSDAGNVTGSSSRAQRARGVSAVPVVNPKINQDEFVSALDELVGVWKVQDGCSVRRITNELPEPARTKFKEAMKNEKINSARLVELLATFDIAVGSDVMRRHRRRLFGKDGCKCPIEH*
Ga0104986_195461F006261GAGGMAVLSSGYTTTEPIQIVNPAEWSFTAVESPTIRVTQLRVQQPLNSSIVESYGVFKPLGASKTIVVATSIYGIDGSYEFTTQGETEWDDLYPVLTYQGILHVHDPLGRQKYVRFVDRTWTEVGDIDNLIRNAKVNYYEVEAP*
Ga0104986_195464F057363AGGAGMDKKLQAMLASYGRSFLAAVTTAFMITGGDLLALDGDSLKAILAAGLAAVLPVAIRAANPKDPAFGKIADGVTETVVSKLTKKAPAKKATDKK*
Ga0104986_195466F011482N/AMATEEIQPTLGEVMRRLDDLTMEVKQMNLNVGQTYLRKDVYDADTEKFAQAMEHITDRLEKMESRSEWVIRTVGGLFIMSVVGASMYVGQIIGI*
Ga0104986_195470F027488GGAGGVSIRWITKVWSDSPYDGTRLLIHLALADISHDDGRFFASQKMLASKGRCSVEYVRKVINQMVEEGHIKIISKGNSRGKATTYQLLWKKLPNSVGEALPIEDDELPNSDTLDSPTLEVSLPNSTPQHPSYTPVLSTTKSDETAIAVIALAEVVARRWWEKQRVKPLGKGAWHSLLQITKAAEARGYSEQQIELALDYIGTVPTMRQMDLVLRGVGIKTKHETGAIRAIELSEKLRHETS*
Ga0104986_195483F042308AGGCGGMGWDVTQVGSNISTKKFINWYLKTTYDGVYEPVKVFEGKNVGGQKAFYVALKKLDDNSIFACVFLTRRKNGSMAVKVMGESEQPYYYEAPKSFINVLTPAKTLEGAWWRNRCLEKEVA*
Ga0104986_195485F029091AGGAGMAQKAVKKIGQYRLYKVEGYGIYEIYYGTKETGVHVENIANKENFEWAVGEIKRATQQAVREEFGIGVSN*
Ga0104986_19549F099272GAGMGGKEMKCYTCGSELRLTMVKGKTYCFRCEVDASMEQYGIIRQTKERSAS*
Ga0104986_195496F004793GGAGGMTIEEAKKIVGNQPTWALKNMVKALQMLPALNTAEDELNLRAAKIVLKERK*

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