Basic Information | |
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Taxon OID | 3300007734 Open in IMG/M |
Scaffold ID | Ga0104986_1937 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 51071 |
Total Scaffold Genes | 66 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 49 (74.24%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.953056 | Long. (o) | 127.81721 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001396 | Metagenome / Metatranscriptome | 705 | Y |
F004761 | Metagenome / Metatranscriptome | 424 | Y |
F013753 | Metagenome / Metatranscriptome | 268 | Y |
F048959 | Metagenome / Metatranscriptome | 147 | N |
F058086 | Metagenome | 135 | N |
F069861 | Metagenome | 123 | N |
Protein ID | Family | RBS | Sequence |
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Ga0104986_193717 | F001396 | N/A | MGPVVVVLQRLRKENTDQHNEGRILLRLIGNKVDKVASKIDGHIGWHDGVKDSVGKED* |
Ga0104986_193729 | F013753 | N/A | MMKQNEEMTLTAAQEKYLDWLCTAPSERVPASKNKYALENTVDISTMRRWEKKDIFRSRWKTQVDDIQGSPERTQKLLDNLYNKALEGDTKSAELYLKATNRMAPPSVTISSNKKTVDLTDAELDSLIATIAEREKANRNHLKAVV* |
Ga0104986_193746 | F048959 | GGGGG | LRKNEPTLDVTITLTELRAVVKSLSIGTDQLAKKINRLGDDKRADDVYAEFADLMSAKKEMEEVLLAALQGESLDNQNNYGHGHTARE* |
Ga0104986_193754 | F058086 | GGA | MKDNRWDIPATQQYNFKNDLQFGKKGEQITKDFLEAISKGSFEVKTDRYRNGRMVVETQQNPRDTGWKPSGVDVTLADWWVYVYALDGSLMVIKVERLKRYIQTLSGKRLKTFAPMSNNPTKGFLLLPEEVMNMMTNPIYDMPGAEQ* |
Ga0104986_193757 | F069861 | AGGAG | MKRQYTGNKDGAAKGLRPGMKVFIEEVIKLGNGAFWNNGDFGVRMMRGSETSMSVHATGRAVDFSYRNMGKGKGVPNGRREAVRMCKLLVENADLLGLEALFDYFPAPWGRAWMCDRDAWSNYKKETIHGAPKGDWLHAEISPEMADSPAKVREAFAKLVLPVAEELKPASE* |
Ga0104986_193765 | F004761 | AGG | MAITLTTLRSQVRDMADLDENDLSNAVIDQFAREGFQRIYALERRWPILQETYTFNTVANQRQYTISTIGDIREIISVVDTSTQGARLTLIDYNDAESIWLGNLDVASRPYFYSFWDKQIWLWAKPDIVYPMTVRAFRNPVYTWLSDITENIDLDEWFHAILPYFVLARVYQRQEDSELANMYMKSFEEGVAFARRDLMKASSAQPVVMSGGRQYPTMKRWLQTLGRTL* |
Ga0104986_19378 | F004761 | AGG | MSDLDETDLSDAVIDQFAREGFQRIYALERRWPILQETYTFSTVANQREYTISTIGDIREIISIVDTSAQGARLHLIDYNQAEMVWLGNLDVAARPYFYSFWDKKIQLWAKPNIVYPMTVRAFRNPVYTWLTDITEDIDLDEWFHAILPYFVLARVYQRQEDSDLSNMYMKSFEEGVAFARRDLMKASSAQPVVMSGGRQYPTLQRWLQTLGRTLKNY* |
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