Scaffold Ga0104986_1907

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1907
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 44019
• Total Scaffold Genes: 65
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (52.31%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001215	Metagenome	746	Y
F018919	Metagenome / Metatranscriptome	232	Y
F045546	Metagenome	152	N
F051081	Metagenome	144	N
F067693	Metagenome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_19072	F051081	N/A	MDLHSQLDHLLTQWDIKQSTKRGYNPFALGIYLRQAERIVESVNQGATISDAIDKHFSDRIAAMLHKKFS*
Ga0104986_190737	F018919	AGGAGG	MTTNANQLQVSKIYPGNYTNVLRYWHDEKSFQFRNQNDTETTYSNQPIGGPVGVVFQPGWVAQQAIGYVDLSFQALGTNQIDYYTQAYSSGLNGANVAFTNAAVIIPSPDAYKDVRADITDGIKVPSGAYVYRLSVRVDGGDVISSGVGGGTSTPTLGLGPAVGVGLNTTPSASGFFVTLAGSNSRIANGAFNTNNVWNSSTLYRTGTETQYKLFAVTNLGGATASGLGQASGVFDPRAANGRLSGKNKALAVCEVCWVLADDAPGRDDLALQPAGLVESNVYTSTVPA*
Ga0104986_190743	F001215	AGGAG	MASTSTNKSPCLIDRPFLRGARISNGTTVVSPTNPAFSDLVQLVRVGDLPTEDAGLVEDIFVVSNEGYPNRSGIRTCALGFYVYAPNQASPSTSTALLISKVEVGLSGGTEGMIQHLELPAVLAPVPSVGDTNLLRPIETGKGEGLYLEKGYILCAGYLGNGPSSVSGGLSPSGITIWAQGGFY*
Ga0104986_190744	F045546	GGTGG	VSRKKGSDNFNFKNKIGIESVKPVGSIKGSDDPNQLLRPLPFERRFRPAVGTKDFGILSDYNYASVWSRWRRGYELSMYTQGANSGLVYSSFKYYVSGTAGVGGYIPGIFFVYPTTRADTRMHMVGIRPRDTFNFLDFGISVAEVTLYDETTYAVKLSQNFGSPISYFHGEVLSNRFNSDGTSKTYGYNNYTVIGVGTDGVIVEPSINPIFNTLFLSVAANTSWTVVDANTMAVPATGPPAIGEFLTTEIRVQCSCQDFLNREGFNLYDTSIKQRYPFTRVQNIDAGYYDAGSSADTRVSTSSDYPGYARTFGFIYLNEIYNLATYSDTALYSDPQLFYFQPKWCKHIYAAFWDLYRKYGLEGSTSYYLPQPNDEPMNEYYREKFEKDLIKQTDFLKRNKDFAWWQKYSPTLSDLPRRLLYSDTYNMVAKTLNFGQLEDLTELQDTNFQMYTIDQFDPLNPAGLPQDTYDGGTYANGELVIQPTTILDGGLYSNGELIPPATYPAFINGGTY*
Ga0104986_19076	F067693	N/A	MIKHFCAVNDVNGNPQRCYVLVNEDGCNLAVWDEGYLGSDAVPGIWRREAYAAERINCSTRWYRKMLRTLPSPAYAYDVPTYSHLWNAL*