Scaffold Ga0104986_1896

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1896
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 40752
• Total Scaffold Genes: 72
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 57 (79.17%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 11 (73.33%)
• Associated Families: 15

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000166	Metagenome / Metatranscriptome	1810	Y
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F001538	Metagenome / Metatranscriptome	674	Y
F001915	Metagenome / Metatranscriptome	617	Y
F002099	Metagenome / Metatranscriptome	593	Y
F003521	Metagenome / Metatranscriptome	481	Y
F004695	Metagenome	427	Y
F006264	Metagenome / Metatranscriptome	377	Y
F012214	Metagenome	282	Y
F014235	Metagenome	264	Y
F017297	Metagenome	241	Y
F027490	Metagenome / Metatranscriptome	194	Y
F034150	Metagenome / Metatranscriptome	175	Y
F098944	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_18961	F014235	N/A	RVTVPSKNEPDPALEKIKADDKKAVPPSLEVLAKMAQLRSK*
Ga0104986_189619	F034150	AGG	MQNGTNAPCKPQFMGQIIKFRSPHANVMLYDICKHNENYDRLEWWALNNPSEAQKQSAFLAI*
Ga0104986_189620	F017297	GGAGG	MKVTEQKNGNYTTFERLAYNGYYVVKLYKSGELADKMMADSYQGARAWLKSFNLLAKNS*
Ga0104986_189623	F001915	AGGA	MEWTLAHPLHDVDDIVNMADSVFGHEADGILTRDKAVFRKNVTVATTVQLFDRSKEFIAVCRGPKVIDTFLGQAEVNDALLGYCWFDRGGYTTYANDEISNAKFHHVDLELSPRLRVRLINEMIDQHILWADRWYIPVVCSTSIRAEHDGFMKIHKKRGFTVHGSYAWLRTEKGMECLKK
Ga0104986_189624	F098944	N/A	MKLATGQIEPKQAIETVPVVDEFDMTAFVPRSQKAAGRPKSIVNKVTEYGALFNKLNDERTSKGLPPLKTAMEVLIDAMQSDELDIKDKAKIADKLAPFESSRAPIISVEHIQNVTREDEGDAEDALNEFLDSLRKV*
Ga0104986_189627	F027490	GAG	MSYGTVINGGAQMRKGVTKGINDKLSTRTAEDDRRATVAGAVNSAYKVNTISSQHTNNTKGGAFTKPSNRSKDYAA*
Ga0104986_189629	F001059	AGGA	MATYDIDALKADLPTAKELAQFVYDKTDSTVSLDLIGKPKEEQYIVAKNALEGKKVPAEYLTGFNPYVEKKDTIPEDPLRKMPKRSIDLPDEDAQIHYFGATNMPHPLDPQSDKKVYIDFRKYENGLITYQITGPVEKVPVGEKLNKYGQTVPEKYTWIDPRTEEKVLRNPDGTFTKDGRGVHTFLIGEKGGGVWSMIDKDIVSISAKNIADPWA*
Ga0104986_189630	F006264	N/A	MEDPSKIFQNKLSSQAEVCARKTLEWLQKDLQGLQKLQPDQVYYLAYAAQILLDIRDNYGKK*
Ga0104986_189632	F004695	AGGA	MLDKQNVIVENLASSSGNRGLTEQVCHEVYVKMVDYLRLTQSKNTYNRFTDYHYLNIPVSNSTEPIRGIDYIQPIVAPGIDYATAVITKCLMPNGKINFEFERFSESDGDQARQATEMVKYMLNSKNDSYQVIRDWAQDSLLHKNGIVMVSPLRSPVTQYKEVEGTRDQLRVFETLAGEKGLTAKRQNMRKIDVDLQGAMQEAMAPDESEAMQEPTGDELQEALRNNTIYRAKYKLTGYETSIRVKHVAQHYFVCNPTISTIQDQDFVGFYDPMTIHECKAQFPFVDLELLADHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADRYSRVIMLTTAWIRRDIDGDGEEEIVECCFSGSYILYAKEVDFIPLANMCPKPITGNFFGYSLGERLVPLQEYATAIRRAEMSFAMQSSTPRIGVNPEFLDAEEIQRGVSAMFILDRKFDPTKHIFEFQPMQGNLAYVESAMNRFESDKMAMIGMTSPSDTLNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDVIYITWKTLVQYSDDFNIQQLAATCLKGQEFLDAKSIENFEFIDRKMINIDLALGFLSEENRLTRQQMILQAQQQFAQAMMMIPQEVPEMFIKVRRPFEDTLRVLGVKDVDAYLPTMEEAVKIMQAQAAKGPSAEQQETASKVELNKAKVQESGSVTALNIRKAQDIDTDDMFEALAAKKGKLSAVQVD*
Ga0104986_189633	F003521	AGGA	MKSLVLNIRDYFNRRTKVIDSHKEANVNRKALVIENGECAKRLLRNDDFALLFNLYRFYLLEMLEESKDDVNRIDNAQRVAGVRDFIEFIERTEYLGKVANKNVETLTK*
Ga0104986_189636	F000857	GGA	MEHGMELNLNNEEAKVNEDYYTGGVLSGGLEGALIKNDKMFNEVKSGTWSQTFNTPNMNYKVGAIDGERYVQYEQKNVESVKEYCKERREFYKMIGTTDNPLFAGTFEAMNLPKCFAHEISGKWFNNRPWDLIKQDKKDKILFYAIVNQFYSDFVCHPSGKIPLPYNPIVPTK*
Ga0104986_189641	F012214	GGA	MSDYSRLRTPFTSMSFTPDVPSNALGPNEYNSGKNIEADVRCIKKIFGEIQIASTITDMPIFMEGGFRSETSWVYIVATRNSSSQGKWWMITATGISNITPGVGANPSAYISGYTEDISITSSWVGNVFFINDTVQNPMYFLPTSNEITVTSDASWNYDVGVTSTRAGFVRNFCSPNVGNILISGNLTKVIGGTSYNYPTTVRWSQAFANQGYPTTWEPTLSNVANEQEVPVRGPLIDGFFLGGNFYVCSYWDTVVFSPISYQNTTAPIFGVRLLNQGRGLFNNNCWTNTDANVYGIDARDIWVFNGSEFSSLGNQKVKDYFFANLNPTYAGRMFMVNNTQKYQIEIYYPDLNSTGWCNKMLSWRYDLQVWNAPKDIQNACMGTEGPRWIDSSPDYFNLSSRAVVYARGGVSSSRLIETSIGNSFVGSAIDSQFERTNIALQTANGPVPYSSKVYIHRVLPEIAGSGAINITVGGANSTAQTAVYGETGITTIDTDTPWVPTQQNTFRTVALKFGSNDATDTWKMSALNMQATVTEDAF*
Ga0104986_189650	F002099	N/A	MGVSVRWLIALALILSLHSTGKDLCSVREFYSIAWGIHDPTERHRLMVEWLTKHQYLCKSTDYRVIWNNMAEWGGNSDSHHLRALVIHGYKEALEREKK*
Ga0104986_189651	F001538	GAGG	MIDTIKLFPTVQPSGYPDKHDLAQVKLEKQHEMNKANELAKQKQVQLQDLEFEIYTKKVVQEQLRMEIFTNRKLDLYA*
Ga0104986_189656	F000166	AGG	MPNIPTPEQTQIFAQSVKKWQQVLSLGDWRIEKGIKPAKQAMASVEFNTQARLATYRLGDFGAEKITPESLDQTALHELLHVFLHDLMTVAQDPKSSQDEVEMQEHRVINLLEKLLSRDSNGFT*