Basic Information | |
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Taxon OID | 3300007734 Open in IMG/M |
Scaffold ID | Ga0104986_1859 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 37214 |
Total Scaffold Genes | 55 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 41 (74.55%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.953056 | Long. (o) | 127.81721 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F018535 | Metagenome / Metatranscriptome | 234 | Y |
F041172 | Metagenome | 160 | Y |
F044373 | Metagenome / Metatranscriptome | 154 | Y |
F045069 | Metagenome | 153 | N |
F081291 | Metagenome / Metatranscriptome | 114 | Y |
F102853 | Metagenome | 101 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0104986_185939 | F102853 | GAG | MKELVLIYYAAIVVATVGFLALFIPEERRPTPAECGVAEIAPDMSTRDREVCRQLRQHRHRM* |
Ga0104986_18594 | F018535 | GAGG | MKTQINTSGPQWPQHLWPYTYTHGDTELLCFVDWEPADQSVGMAAGAWLIHAYAGGVDVVDLLKDHIIKDIEREAACSLSSD* |
Ga0104986_185940 | F044373 | N/A | VLTLAAQMKTGGKKMLRDGYFIREEPPKIGAHYTPQFYQKPATPEERFVQDIMLGVPVRYESPVVKFLGRLLSV* |
Ga0104986_185943 | F081291 | GGAGG | VKRIDYWKAKLPGARAEERIRQKELNQMARAFERAVEKVAEIEQRIEDEKDKLASPKR* |
Ga0104986_185945 | F045069 | AGGAG | MRYLLLLLAAPALAAEPAYLTYDDVHVQTVLTQDRPSWCYGMKMAFDIDGLNRAYYGCWAGSQGFVHIEMLDGSKRVIPMAKFNKPKEATK* |
Ga0104986_18596 | F041172 | GGAG | MAKLKTAILRAQETADIIGTNESLLWKAREVLSKALDDPEPFEGMASAETALYLINTYLLENELCKQ* |
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