Basic Information | |
---|---|
Taxon OID | 3300007734 Open in IMG/M |
Scaffold ID | Ga0104986_1853 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 36910 |
Total Scaffold Genes | 47 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 19 (40.43%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (37.50%) |
Associated Families | 8 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.953056 | Long. (o) | 127.81721 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F004206 | Metagenome / Metatranscriptome | 448 | Y |
F007030 | Metagenome / Metatranscriptome | 359 | Y |
F010533 | Metagenome / Metatranscriptome | 302 | Y |
F015720 | Metagenome / Metatranscriptome | 252 | Y |
F022396 | Metagenome / Metatranscriptome | 214 | Y |
F034152 | Metagenome / Metatranscriptome | 175 | Y |
F053148 | Metagenome / Metatranscriptome | 141 | N |
F102858 | Metagenome / Metatranscriptome | 101 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0104986_185311 | F022396 | AGAAG | MNVGSNRQLAGENGGRYITASNGTVSGNWMEIHAVSTTILGSCTSNITDLGGGVTIQAGDSINGVFTSISISSGSLVLYNRKWA* |
Ga0104986_185312 | F034152 | N/A | MRLGLGLGLGVDQPISSNGGGADLPIMRRDLLREDEGFLLLEDGVSKIVITFGTFDSILCENSNFLVQEDNGKLIIQAN* |
Ga0104986_185317 | F015720 | N/A | MKNTKTTLAGIGAILVAIGGTLKAIFDGDPATSVDFTSTIAAISAGIGLIMAKDASEKLEIKKPE* |
Ga0104986_18532 | F053148 | N/A | MEAPHLVKIGVQRGWLSYPKDMAFKADGTPDPVIEAEPEFTEQRHTPDLARKAYVLRDRGLSLNDVAAACQVPRGSVVYLISKGHELFLASQRKDIVP* |
Ga0104986_185320 | F010533 | N/A | MRTVTYDYVLQRACELTGRVFSTLTTEESNFFRTFISMSLRSAWECFDWPEQTVYQQEFFAPNYSDAITYTQGTVVYYPVEQKYYQYVGAPNSEVPPTNNGPNGALNSQCWGLAQSSYSGNANWNATTTYTVGTIVLYPVTQEYYQLFNTAAAGTLPTNTSYWGRLNKFLRNISQTTNVDGTTRAIPIGETFSVWPIDPRVTWRQQEAPYTFTDDGILITADLPYVWLEFRKTPPLLSSAAEATAYAFPYRFCEICSLKAAGQMLRVDGKIDLGNQFLELGEAELTKEIDKVALQEKYVRQIIVPSR* |
Ga0104986_185323 | F004206 | GAG | LINQITDYLLRKLPDSFKGWTREAVEDYVLFHVQQGTLKIATQDDQVVAVLVGWRQMGPEPKPWTWQASDPNGDHWYWHQFAADCAVFAMAVAAKFFHDRPEAAILPAIGYRNGKLTTYKKGSMPIYRVASKMI* |
Ga0104986_18533 | F007030 | N/A | MYAYGGMSSACIMSWVDLTAKFSWSDRQTDLRTIREDALISRSRCRATKWFLDSGKDVWIQLDHDIEFDASDIIHMAELAHEHQATVCIPYPCRTVPPRPALRPKAEHLQALKHQVSDAECAAELVPITMFASGCLAIPRKCLIATLDALGGSGVQYPYKIDWCDDVRVERFPTLWMPFAMEARPGKLEYLSEDYAAAARMTLAGVQHFSMKPKMQLNHWGEYPYSFKPYAG* |
Ga0104986_18537 | F102858 | GGA | MKLTDEQLSEALSVSEEHPVLKAIGQILDDTLRDEVHNAIIPSLSAEDRAYNSGRAAAIKDLIAQISALRNEKELTSGQF* |
⦗Top⦘ |