Scaffold Ga0104986_1770

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1770
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 31252
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (80.39%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003658	Metagenome	474	Y
F003862	Metagenome / Metatranscriptome	464	Y
F008237	Metagenome	336	Y
F012770	Metagenome / Metatranscriptome	277	Y
F031792	Metagenome	181	Y
F039991	Metagenome / Metatranscriptome	162	N
F046323	Metagenome	151	Y
F057904	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_177012	F012770	AGG	VTFDDEPPHNHCNECNETFDDSFQLIDHTLYEDEEFDPYYLLPNGFKLLLGSLLRFMYNNANEPEQIKLITQSTYVTLFASENGYDLVDELVEDMIVKSALQNFDEDLEALLKKDTTDEEDGE*
Ga0104986_177015	F008237	N/A	MSIGWERIEPWKYIVDAVASEYSRKFQDIEPQDLRQILYQWFLEHPNKLDTWEAIGQKDAKNLIYRSLRNQALDYCQHWKAKSGGYETSDLFFYESDMVEALLPPVLRGEFGVTHKLNLGGPARPSAPSEGGNLMAMMIEVDLGFWKLHQDDRKLLFLRYVEAMDFGDIASQLGLGSEDTARMRHKRAIKKLINKIGGFKPFRDEDDVPIVRED*
Ga0104986_177019	F003658	AGG	VLDLRGKPITTCVCGCKMFIVTLMWDDETREASWYDLRQECKECGAISTAPTPIDWRDE*
Ga0104986_177022	F046323	AGAAGG	MTQHFQVVYETKGVKVVNVWLSPEQELPEQWKTMTYAEQDEWLYEHQVHSNVKWTDEYKGEAVNVLPVLSLKLVV*
Ga0104986_177023	F031792	AGGAGG	MGYEPPLNDPFFYAEEEEQTFNCFICSEPLDRDDIVWADVEGQILKEDNDCSWCVSCLPAEKGATE*
Ga0104986_177046	F003862	AGGAG	VATYTLVTPTLEQGHIGAHRLFTHFKQRTKSYTIILSSGVYSLIQYPTEDELATYTAYYMGGCQHTGITEAIRTAMIADAIVTSANFTVE*
Ga0104986_177047	F057904	GGTGG	MGLHQIQTHPEYVEGCFGCKIQLLELSTGDARGDVIASGTTQKKWNSELEAYRSARAQGIQPNGTKIKQIQAAHEASEKIGAAYDGNTMVQAKKIDKPTATVMRELKEAGIQ*
Ga0104986_177050	F039991	AGG	MAKQKKETLAVAWCDNGMVDGKFMEGVVDTLINSGVEFCGSLRAHGNQIAQQREMLVNRWYDNNKSDWLLWLDSDIMITPEKFLKLWNRRDAVDIPLLTGVYFTSNEPEQPLMKPLATVYEFAEAEFGIGIRRLDPLPKNAFIKVSAAGMGFCLMHRSVITRIKEALPGVPFFTEVGANKQFTGEDIYFFAVVNKAEIPLWCDTGATVGHMKRFNMDENYYDAFGRGKGYAK*