NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104986_1751

Scaffold Ga0104986_1751


Overview

Basic Information
Taxon OID3300007734 Open in IMG/M
Scaffold IDGa0104986_1751 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)28460
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (29.69%)
Novel Protein Genes12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (16.67%)
Associated Families12

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.953056Long. (o)127.81721Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000962Metagenome / Metatranscriptome820Y
F005387Metagenome / Metatranscriptome402Y
F008235Metagenome / Metatranscriptome336N
F010913Metagenome / Metatranscriptome297N
F014847Metagenome / Metatranscriptome259Y
F015581Metagenome / Metatranscriptome253Y
F016528Metagenome / Metatranscriptome246N
F024308Metagenome / Metatranscriptome206N
F024548Metagenome / Metatranscriptome205Y
F028095Metagenome192Y
F041194Metagenome160Y
F065436Metagenome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0104986_175117F008235N/AMINYLKNLFKKPETTPVEQPKNKYYLAKYRSNVSLHITYNQLDTDGYHEYRQYENIESDDNVVFLEQKNKSIKAYQEVISNINEQLKDNSSEYIMVQKVFLFKKSDFVNVKITIKDNK*
Ga0104986_175131F005387N/AMEKLNRKGFFSTLFGGIAGVVAGSTVKASEPSVPTPPVVENVLTCEKLVFTRSDGATCVMQFRDSDNFEILVNNSENISINICSPLNKPAVVKAETNSFGYYGAESRLTIASNGNIGLGTHTPTAKLDIRCDS*
Ga0104986_175140F065436N/AMKYKYSIKIHNVIDYSELENIMNDYGRDGYRVTKAEFVGDVFENNRPVKKFVVYLEKKIKK*
Ga0104986_175143F024548N/AMKSADNVVELTESDIKKYTKLKEGTKIEPNDCVHIYDNFYAKLSKGSIVCKEVVNKYNTILRKK*
Ga0104986_175146F015581N/AMNELTKPNAFVFKAFIDNEYKLCVCPRIDNKWSEADIVYIQDYDGAFDDVLHEKYFSVLFVGYEKTNDTNGKFTLKNVNAQYIKSDTAIASDMYADNSFFSTIEKGYQHFYEQSITSEREGIVSQTSEQENL*
Ga0104986_175147F024308N/AVKKVILTKIEYDFLIECLEKLEKHTDDSPADSKWFEKMDTTRRLYELEMEHFNIKKYGDPSTKYQMVKWLLTKVKTKSLDF*
Ga0104986_175149F041194N/AMDNLQITCNYCDMPAKLKRVKIYMQCHCCDDRRIIDLREYLLEDKHHDYLYSMFNDNFVYNEAKA*
Ga0104986_175153F016528N/AMINNNELFAKVLAENPLPYHYGDKVNTNRGIGFISGYNFKDREKTWKFTIRPFGLSNYYTDVETVYGKVD*
Ga0104986_175154F014847AGGMEFESNEENLANTMDCIRNLHEENARLMQEVEQLKEENKELNRKLKSIQALFL*
Ga0104986_175155F000962GGAMNIHVPEEIKNKYPHMEFRGKQRILNDRTVIEAYNHATEQNFFYSFEEDFFWFPSQIPDYKLPKVS*
Ga0104986_175156F028095N/AMSEQTYMKLQDKVNRPKLSRENINRENKQFKRVVDQYEQWCTSGGGYETRETYEDDIIDCLFESDNDGYALATFLKEKVYIEPDSELVDILDCVSNVMYSLSKEIIGQWTKENFLEIPSDVIGKKVNAKQGYKKYENHYITGIKPETYEVTVAEVFNKKGGWVVRYEDITLL*
Ga0104986_175160F010913N/AMNTLKKFFKAVFGNNDNSECYNLMLLKAVLDSNKQQIERLNEIMAAINNLQDALARLSAATDSAVTVLNTPHPSEEAIQAAADLVNAQAARLEAASDNDPTTTA*

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