Basic Information | |
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Taxon OID | 3300007734 Open in IMG/M |
Scaffold ID | Ga0104986_1733 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 26896 |
Total Scaffold Genes | 29 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (58.62%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.953056 | Long. (o) | 127.81721 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F005416 | Metagenome / Metatranscriptome | 401 | Y |
F007581 | Metagenome | 348 | Y |
F010016 | Metagenome | 309 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0104986_173317 | F005416 | AGGA | VSLDKEPEWIFPFEAMSVGDSFFVPTLKPSPIIYAIESGAKRAGMVAKAFVTQKDGCLGVRAWRIK* |
Ga0104986_173325 | F010016 | GGA | MKKTARNDITGDFIHSKPSSDMFEKNFDLIFRKKKPEDTEYELNKSTGEVQKKED* |
Ga0104986_17337 | F007581 | AGGA | MNMEKITSMLFPVIVSAIAWMISSVTSMQNDLIDIKAKMPILITEQGVPTDSPISAEHRGKLKEELRAQISELNVRIRILEEHDMQRRGK* |
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