Scaffold Ga0104986

Basic Information
Taxon OID	3300007734 Open in IMG/M
Scaffold ID	Ga0104986_1732 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Chunlab, Inc
Sequencing Status	Finished

Basic Information

Taxon OID

3300007734 Open in IMG/M

Scaffold ID

Ga0104986_1732 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

Chunlab, Inc

Sequencing Status

Finished

Scaffold Components
Scaffold Length (bps)	26884
Total Scaffold Genes	48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	40 (83.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

26884

Total Scaffold Genes

48 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

40 (83.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location Name	Gangwon-do, South Korea
Coordinates	Lat. (^o)	37.953056	Long. (^o)	127.81721	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Gangwon-do, South Korea

Coordinates

Lat. (^o)

37.953056

Long. (^o)

127.81721

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036680	Metagenome	169	Y
F039535	Metagenome / Metatranscriptome	163	Y
F059960	Metagenome / Metatranscriptome	133	Y
F074589	Metagenome / Metatranscriptome	119	N
F081323	Metagenome / Metatranscriptome	114	Y
F082668	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_173210	F059960	GGAGG	MNKNIEALLVERASYVRRNLPKRVEAVDEALRELGFGHKYMTPEPVIETATKETSTETTSLNRGKKKKE*
Ga0104986_173226	F036680	AGGAGG	MKITKHSLDHIELIASGDTALFEIRLVVAMHDWSDDEADAGFDEIGALGWLMNLLHLASQGEDIQTGAQEFLKSMMTLNEERVHLCKVEKVQYNIDEIGE*
Ga0104986_173231	F039535	N/A	MLGLTYTPIEANDERTRHDLSRTEQRKLETYNQVQKEDTVIGVDMRKIVALFVASFISWVGIADAAEAPKQIDRKQMVQHPFDFVPETKRTVPAWAKCPDLWNRLRDAGWLEKDVVKADQIVWRESRCIATAHNKNDPNTVQGVKGSLGLFQINLFWVQRTTYYPRGYLQTVLDRELMPTDLFDVDVTIASAQALIAYDRGLGRCGWSAWLGC*
Ga0104986_173232	F074589	AGGAGG	MTPAQIEGFIDRICGLFPTSQIGRNTVKNAWTADDFLLLQDVDDARKVVPLIMEYHDKFPSLKEVHKAFALLRKPATDQTIVVCEICDGNGWDNGRRWNYNAKELICEGFTKTVMGRTYTYVVPCKCREFGAA*
Ga0104986_173247	F082668	N/A	MSDAFATIVVALISTIGVIVVGLMQLFKKEAREAAIENRQDHAIVQQQLRMIFKSVNRVDDKLDKHLTDHEEGTNGKVTRRN*
Ga0104986_17327	F081323	AGGA	MATYKVLSENCTLGKQGDTVNGDELEAQGVNVVALLDGGHLSEVNVKVLKQEPKEMDK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0104986_1732

Overview

Ecosystem & Geography

Associated Families

Sequences