Scaffold Ga0104986_1705

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1705
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 24838
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (89.36%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001094	Metagenome / Metatranscriptome	780	Y
F003784	Metagenome	468	Y
F005558	Metagenome	396	Y
F020684	Metagenome	222	Y
F023834	Metagenome	208	Y
F031792	Metagenome	181	Y
F093528	Metagenome	106	Y
F095162	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_170518	F005558	AGGGGG	MNQESMSWSEIAQLTHATQVENFDWCWCEDNEGNENPYSDCPKEEK*
Ga0104986_170520	F093528	AGG	MKEEGSVTHVVTLVIQAGSKWNKVELFDFSGGEPTPLASGEGSNWRTALGEALSKITLSSDTPEKSVSDVVKEIKEEEGE*
Ga0104986_170521	F031792	AGGAGG	MGYEPELNDPIFYENEEEDNEIKCFLCSEPLDQDEVVWADCEGQWQVRGKEGNDTAWCVSCLPSEKGESNE*
Ga0104986_170522	F023834	AGAAGG	MNKEYWLAKAELCRDLALIQIQEEETEKEAGMNLMRMTYALSMVDVYSEGQGENE*
Ga0104986_170524	F095162	GGAG	MENEKRLASAAKQAVYYRNYRRARDRALVKLAQTYPDAYKELLEKEKVSDEQEGKAWIDLNGTTISPRIVARAKARGITLTQTDTNQGNNGGEG*
Ga0104986_170529	F003784	GAG	MDHSGTDFAAYGLSGPEPRQVQRDTDNKAHTNPLVDHLAVVGYRAMGVSTEDLTSFIEAFASLRAMRVKGVGHEQYAIAQGQKFESFTTADTIRELVEELADASNYIDFLAIKLLNIQHTIDLVLPDCD*
Ga0104986_170533	F020684	AGGAG	VLSNYALTTEEEAICVEVGYQRQKPYFADPTKNVNYSEGDLWEMWQHVVCAGSELAFARMVGKYDFTPHYNKWKSELDIPGFGEIRYSFPPVRGMRYSSRDNDNLVYVLMSDGLCHKTRRVGPDWKGPEYKAIGWKLGSECKREEWRYNDRTWYVPVTYLNSMESLTFNGE*
Ga0104986_170541	F001094	AGGAG	MNKEKLIAIAGTYLRAGIASVIALWLAGVTDPKALATAGIAAIAGPVLKALDPKSTDFGRGAK*