Scaffold Ga0104986_1688

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1688
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 23246
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (77.14%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004668	Metagenome / Metatranscriptome	428	Y
F006467	Metagenome / Metatranscriptome	372	Y
F015973	Metagenome / Metatranscriptome	250	Y
F018159	Metagenome	236	Y
F038593	Metagenome	165	Y
F046346	Metagenome	151	N
F057985	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_168810	F018159	N/A	VNDATILAGLAAHLTNATPPTGYTLRQVHTYPPDNLPVVPACVLIPGEDTISYGAANRQVVLTINATVYIQPQADLGRKYADLMAWRSWLRDSLIDGVTLDGTSSVAQASVTSTSIGTDTWADQDFLTISATVEVAVVEAISTSA*
Ga0104986_168812	F038593	AGGAGG	MAQNKPDFRTVEVSLSAPFEGWKATMKAEGVPARVFIELQSGNVERSLKAVERLVVSHNFLNEDGQPAESVLDAPMDALTDAIGKWSDAVAALPNR*
Ga0104986_168814	F057985	AGGAG	VAANSLDRLTISFNVDSNYEALRLGYIKGANPAAFKRLLSLASLNAARTMVAPMRAEAPIGKTTKTPGRLRKSVTARRARFNTPAAVVGPRAGRNRAGVNGGAWYRWFVTSGISGVRQTKNGPKAVKAVPANPFVTRVSNNEGRQKTAMEAHAKTVESFLNNEVFRNTILRFKRGR*
Ga0104986_168821	F006467	AGGA	VIKAIILDLLGGAWTILGLLFAVVVLPEGQTQQTMAALFIGLTVVWIATGPLRWRE*
Ga0104986_168822	F004668	GGAGG	MTLTTDHFEEIREQGWTRVEIALGEWVALVPNEDGSAFGGTLWKRGENGNDYAEGCTVGHPISGALSHEKAGLALAAHIKEEIGE*
Ga0104986_168823	F046346	GAG	VKYRIKSQLYSDAEAQKKTGAILDDCGPSSAAAAAAYVHGYAPDFSAADGVAAKERATGFKEKQGVSDNGSSLPELAKTVRELGCKARPADDWKDVVESAKAGAALLVWVQAPSGYPKQALSKWHRVWAKYWEKTDPQVLAAGYGHMTSAAYDAEAQTFVFADPTFDERDPKEQFAVPVTEAELKAIASGKPGSPASHIVIVTKK*
Ga0104986_16888	F015973	AGAAGG	VSVNGSVVTVGTTATVLATGKVGASWIYLHAPSGGNTVFVGPSTVTAANGLELPKGALQTFWLAETDVLYGIVATSTQALMVMQSGGR*