Scaffold Ga0104986_1654

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1654
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 21227
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (79.31%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001706	Metagenome / Metatranscriptome	648	Y
F050167	Metagenome / Metatranscriptome	145	N
F057118	Metagenome / Metatranscriptome	136	Y
F093272	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_165416	F093272	N/A	MGSIITPPREVRTTKAWQGSRSKRFSNLVVRDKAGNIIVAIEDSPAVKLARRTIKNAKPSPATPKPLTELELRNIKAQERLAELAKLLAKPAESYL*
Ga0104986_165428	F001706	AGG	MKHWEHHPEPIDGCFGCKGLGLQMNTGDAKRDIPDKKWNAELQAYRDARAQGIQPAGTTMRHVQEAHRASEVLGKAYNADTMPKTKDITPKAATVMKEIGQI*
Ga0104986_16545	F057118	AGG	MNTNNYKISINVRAELVYYVSEYDIDRAIELAIDAPYKEWEVSYFDMPTGADVQAEEI*
Ga0104986_16549	F050167	N/A	MKGNTMTTTTARVYEDYLASISMTLADLADELATVQLDVESVNGYEPRGTILKALPTQTRFKPKSMWVSLGNGKYQHLTGSKGLIAKHSRLDGYTSVVFRP*