Scaffold Ga0104986_1643

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1643
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 20748
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (81.82%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027164	Metagenome / Metatranscriptome	195	Y
F072099	Metagenome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_164311	F027164	AGAAG	VRYVGDFIGAVEARQKTIAQSLVDGNAVNFETYQRLVGQHQGLAEALVILNNLLKEDEIDER*
Ga0104986_164324	F072099	AGGA	MIYRKLPTRNVLLTKANMPLVEMGDKRLDTLREDFYDNAVNGTVNSSSPGRFIPIFSPYDIALSGGEPYSV*