Basic Information | |
---|---|
Taxon OID | 3300007734 Open in IMG/M |
Scaffold ID | Ga0104986_1612 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 19387 |
Total Scaffold Genes | 42 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 29 (69.05%) |
Novel Protein Genes | 9 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (88.89%) |
Associated Families | 9 |
Taxonomy | |
---|---|
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.953056 | Long. (o) | 127.81721 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F015731 | Metagenome / Metatranscriptome | 252 | Y |
F032271 | Metagenome | 180 | Y |
F037732 | Metagenome / Metatranscriptome | 167 | Y |
F038244 | Metagenome | 166 | Y |
F049630 | Metagenome | 146 | N |
F061843 | Metagenome | 131 | N |
F064712 | Metagenome | 128 | N |
F077222 | Metagenome | 117 | Y |
F093846 | Metagenome | 106 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0104986_161217 | F015731 | AGGGGG | VSVEIEKGVVDFDTNAIAWLENYKNALAKIKEWQEVADVARSHIENSLGDCEVGIYQNRPVVRWSFVETRRFDVKRAKEILPQQVLDTLEVISNSRRFTIVEADNE* |
Ga0104986_16122 | F037732 | GGA | MLSISIKILDIATEIETDQNLSFDAIDSLLNRAVQSTLQAYLSLPESDRLAPYKLYN* |
Ga0104986_161221 | F061843 | AGG | MSTTWSEVFKIFIGNDGSYNLYLEEQEACVNLIENISDEIEISDFAEMKAASSANLRDDKATLRLDNIRKNLPPMALKVAKLSERELLDLAQEIIQVVQDKNKVRLEIVK* |
Ga0104986_161222 | F093846 | AGGGGG | MEIAILIGVAGAALMGASLASRLTNGTDDWAGQVKKAERSRAKMKKALEK* |
Ga0104986_161228 | F077222 | AGGA | VRILWALLSAIVAVGKGRRPLPWAILGFIGGWVAFGVVCLSRQRPLRPVPAWALNLGYKSQAKRAVAGIDTPKDLLE* |
Ga0104986_161236 | F038244 | AGGAG | MPISSSQVTVTTSPTLLVSGDGVAEGVYLHSKHTVYLGGSDVTPSTGYQMDNGDKLTINNHESPIYAIAGAGSGTMQVLVVTK* |
Ga0104986_161239 | F032271 | GGAG | MTKPMIRIHNVETNEVIDREMNDAEFAQYESNQVKLNAEQAEAEAKATAKAALLERLGITQDEANLLLS* |
Ga0104986_16124 | F049630 | N/A | MKVKSSLTELPDLHFEAQMFITPGRSGSGKASAERSIGVNVSALDFSMATDLLRTLHSWEVIIRADRRLTPPALVPKERTIDAEVQATVDFHCSHLEWSLTQEWAVEFAGEVYGLHAKGRSAAKRFTEQARRIPCPTDDCKRFVVIDVENLMDDVTCFTCKQSWTVLRLIALAMSNPNRKFYLDVEAIAAWMGTTERTVYNLIKANKVERRGSLYDLSAIIKARNSTL* |
Ga0104986_16125 | F064712 | AGGA | MSYLDFKPINCKACGKLIWQGHSSAGFLTKLDTDRLNVIEEIIKKVNKFRTYEAHRTLVSFEATPRMGAYVIGTVYKPERVILAEHQCSTFTLFETEPPDYWNRVRTKKSKAEEIPF* |
⦗Top⦘ |