Scaffold Ga0104986_1612

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1612
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 19387
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (69.05%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015731	Metagenome / Metatranscriptome	252	Y
F032271	Metagenome	180	Y
F037732	Metagenome / Metatranscriptome	167	Y
F038244	Metagenome	166	Y
F049630	Metagenome	146	N
F061843	Metagenome	131	N
F064712	Metagenome	128	N
F077222	Metagenome	117	Y
F093846	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_161217	F015731	AGGGGG	VSVEIEKGVVDFDTNAIAWLENYKNALAKIKEWQEVADVARSHIENSLGDCEVGIYQNRPVVRWSFVETRRFDVKRAKEILPQQVLDTLEVISNSRRFTIVEADNE*
Ga0104986_16122	F037732	GGA	MLSISIKILDIATEIETDQNLSFDAIDSLLNRAVQSTLQAYLSLPESDRLAPYKLYN*
Ga0104986_161221	F061843	AGG	MSTTWSEVFKIFIGNDGSYNLYLEEQEACVNLIENISDEIEISDFAEMKAASSANLRDDKATLRLDNIRKNLPPMALKVAKLSERELLDLAQEIIQVVQDKNKVRLEIVK*
Ga0104986_161222	F093846	AGGGGG	MEIAILIGVAGAALMGASLASRLTNGTDDWAGQVKKAERSRAKMKKALEK*
Ga0104986_161228	F077222	AGGA	VRILWALLSAIVAVGKGRRPLPWAILGFIGGWVAFGVVCLSRQRPLRPVPAWALNLGYKSQAKRAVAGIDTPKDLLE*
Ga0104986_161236	F038244	AGGAG	MPISSSQVTVTTSPTLLVSGDGVAEGVYLHSKHTVYLGGSDVTPSTGYQMDNGDKLTINNHESPIYAIAGAGSGTMQVLVVTK*
Ga0104986_161239	F032271	GGAG	MTKPMIRIHNVETNEVIDREMNDAEFAQYESNQVKLNAEQAEAEAKATAKAALLERLGITQDEANLLLS*
Ga0104986_16124	F049630	N/A	MKVKSSLTELPDLHFEAQMFITPGRSGSGKASAERSIGVNVSALDFSMATDLLRTLHSWEVIIRADRRLTPPALVPKERTIDAEVQATVDFHCSHLEWSLTQEWAVEFAGEVYGLHAKGRSAAKRFTEQARRIPCPTDDCKRFVVIDVENLMDDVTCFTCKQSWTVLRLIALAMSNPNRKFYLDVEAIAAWMGTTERTVYNLIKANKVERRGSLYDLSAIIKARNSTL*
Ga0104986_16125	F064712	AGGA	MSYLDFKPINCKACGKLIWQGHSSAGFLTKLDTDRLNVIEEIIKKVNKFRTYEAHRTLVSFEATPRMGAYVIGTVYKPERVILAEHQCSTFTLFETEPPDYWNRVRTKKSKAEEIPF*