Scaffold Ga0104986_1604

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1604
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 18998
• Total Scaffold Genes: 41
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (82.93%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000821	Metagenome / Metatranscriptome	876	Y
F001094	Metagenome / Metatranscriptome	780	Y
F003212	Metagenome / Metatranscriptome	500	Y
F003456	Metagenome / Metatranscriptome	485	Y
F004110	Metagenome	452	Y
F006653	Metagenome / Metatranscriptome	367	Y
F026830	Metagenome / Metatranscriptome	196	Y
F033321	Metagenome	177	Y
F040479	Metagenome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_160410	F000821	GGAG	MNREYLEAKFDLCINEAEKDLQQEEIARAIANLRRANSALSQLFGFEKEDESE*
Ga0104986_160413	F040479	GGA	VNPASTTLLAQETLRVNQLRQLSELLNSLESVVESLNYKSFTLYDTLNTAIEAVSVALNDTQIESAGTEI*
Ga0104986_160419	F004110	AGAAG	MTELHPVIYDLVPSVANTIHRRYKAYVEKDDVKQECIAWAMTRANDHNVDLMEPNEERRKHNEQRIAWQMRRVAERYARKEKAMKSGYATTDEVYYESFTLGQLLPFVIASVIDGTVLEQVQQMIQDGQPKGKSSPSEGGNLLASLIDIKKGYLQLEVEDQTLLRLRHHENYTLQQIAGHLECAISTADRRCAHSLRKLQEILGGISPWQ*
Ga0104986_160422	F026830	AGGAG	MPVPGGEITTTEILVPEVVPVEETKEEEAEDDLPELS*
Ga0104986_160423	F003456	AGG	MSQYNKTKGSQFETDVMKWLRKCGVLAERLTKAGAKDEGDIVTVVAGETYILELKNRATLSLPEFWREAEVEALNYANARGLGEVPLHYVVVKRRNASIDKAWVIQDLAQWIKEKQ*
Ga0104986_160424	F006653	GGAGG	MSEQLSNKYRDNLKLEGLRADVDALKVDLTNFVGALLQSGIVELVKDETGQVVYKINKVVLVDESVQQD*
Ga0104986_160434	F001094	AGGAG	MNAKTKAVLASYLRAGVAATLALYLAGETDPKKLAMAAVAAVAGPVLKWLDPKATEFGRGSK*
Ga0104986_16047	F033321	GGA	VSRELEVLRDEYRRAVANPIFDNPEDYCILLNLIQDRIDEIEARYANY*
Ga0104986_16049	F003212	GAGG	MKDKWLVTLEIETYDGDPRKWDWDYIFTGDDVVKAISSDFKGRVLPTEGEGNE*