NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104986_1602

Scaffold Ga0104986_1602


Overview

Basic Information
Taxon OID3300007734 Open in IMG/M
Scaffold IDGa0104986_1602 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)18925
Total Scaffold Genes38 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (92.11%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.953056Long. (o)127.81721Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000649Metagenome / Metatranscriptome960Y
F017297Metagenome241Y
F082348Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0104986_160226F017297AGGMKITEQKNGNYTTFERIQYNGYYIVKLYKNGQLCDKIMADTYSGARDYLKSFNLLAKNS*
Ga0104986_160238F082348N/AMPRPPSDITGTHIQIAVRVTQALKDEFQSMGGAMWLRKLLANQIEQRRKLEAEFKKK*
Ga0104986_16024F000649GGGGGMSKNATHYLPDGKVYKGKLHKAGGVLMTGAKHTPESKVLTHTPPPKPKAKK*

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