Basic Information | |
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Taxon OID | 3300007734 Open in IMG/M |
Scaffold ID | Ga0104986_1600 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 18834 |
Total Scaffold Genes | 36 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 27 (75.00%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.953056 | Long. (o) | 127.81721 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001531 | Metagenome / Metatranscriptome | 676 | Y |
F001599 | Metagenome / Metatranscriptome | 665 | Y |
F008808 | Metagenome | 327 | Y |
F009064 | Metagenome / Metatranscriptome | 323 | Y |
F011647 | Metagenome / Metatranscriptome | 288 | Y |
F018684 | Metagenome / Metatranscriptome | 233 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0104986_16001 | F001531 | GGA | MDWDNIERWDYIVTAVASEYHRKFSMVELEDIRQSLYQWFAEHPNKLKDWEAIGDKDAKNLIYRSLRNQALDYCQRWKAKSVGYDIGDIHYYDSEIVEALLPPVLRGEYGVTHKLNLGFTGRPSAPAEGGNLTIMMLEIDSGYWKLSKDDRRIIFLRFAENLDFGEIANYLELGTDSAARMRLKRAITRLINKIGGYKPYRDVDTTSEEPEEEHQPPVE* |
Ga0104986_160029 | F001599 | AGG | MSKKDSIALVWCDNGMVDGKFMQGVADVMLKSGVEFGSTLRSQGNQIARQRQTVIDYWYDKTDYEWLLWVDSDVVISPEKFKLLWDNRDAEKRPLVTGVYFTTDNPEEPLMVPMPTVYSFVNDGDGGVGITRVHPLPENQLIKVDAAGMGFILMHRSIVPKVREAGPDGQVFMEIGRGTKFMGEDIFFFALCDKAEIPVYCHTGATVPHMKRFSLDEHYYKAFFGKPKEEPKSKLITPDKKIITPR* |
Ga0104986_160033 | F011647 | GAGG | MSSGQRKRHDGWNKSIMRDGLIVILRKDGSEKVRLDPKTKEVVKGR* |
Ga0104986_16004 | F008808 | AGAAGG | MDRSIPPCPECGQRFNNVFEATDHLLEDDDDEFDPALILPNGARLMIGSLLRCLYKYADKPDQIKTITQSTYMTLFTAETQPAAMKDIVEEMIIESQMMDIDNEIEYFLGRNSNE* |
Ga0104986_16007 | F009064 | GAG | MIVQLNKDEVRVCTMLAVERWLTKFGSTDQPNYAQGKADGKLEPEINANIRANVCEWAVAKHYNMSWNVPCYPNALHKKRHSLPDVGENIEVRSVRTQDSIPFWAKDKGKVIIGTKCLDTEYYSEIEIFGVAYPEEFMKPEYYDSYINGWRIPISGFTHE* |
Ga0104986_16009 | F018684 | N/A | MRNIMANEDWKLQVSYKTPSGDMINVRANTADELSVLLEGVGDYSPQIAATQQKIVGSYALNPSLTSSSTTSTKPSTYSAPTPVSQASGTAAPVCKHGARIWREGISKASGKPYAFWACPSPQGTPDQCKPVN* |
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