NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104986_1600

Scaffold Ga0104986_1600


Overview

Basic Information
Taxon OID3300007734 Open in IMG/M
Scaffold IDGa0104986_1600 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)18834
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (75.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.953056Long. (o)127.81721Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001531Metagenome / Metatranscriptome676Y
F001599Metagenome / Metatranscriptome665Y
F008808Metagenome327Y
F009064Metagenome / Metatranscriptome323Y
F011647Metagenome / Metatranscriptome288Y
F018684Metagenome / Metatranscriptome233Y

Sequences

Protein IDFamilyRBSSequence
Ga0104986_16001F001531GGAMDWDNIERWDYIVTAVASEYHRKFSMVELEDIRQSLYQWFAEHPNKLKDWEAIGDKDAKNLIYRSLRNQALDYCQRWKAKSVGYDIGDIHYYDSEIVEALLPPVLRGEYGVTHKLNLGFTGRPSAPAEGGNLTIMMLEIDSGYWKLSKDDRRIIFLRFAENLDFGEIANYLELGTDSAARMRLKRAITRLINKIGGYKPYRDVDTTSEEPEEEHQPPVE*
Ga0104986_160029F001599AGGMSKKDSIALVWCDNGMVDGKFMQGVADVMLKSGVEFGSTLRSQGNQIARQRQTVIDYWYDKTDYEWLLWVDSDVVISPEKFKLLWDNRDAEKRPLVTGVYFTTDNPEEPLMVPMPTVYSFVNDGDGGVGITRVHPLPENQLIKVDAAGMGFILMHRSIVPKVREAGPDGQVFMEIGRGTKFMGEDIFFFALCDKAEIPVYCHTGATVPHMKRFSLDEHYYKAFFGKPKEEPKSKLITPDKKIITPR*
Ga0104986_160033F011647GAGGMSSGQRKRHDGWNKSIMRDGLIVILRKDGSEKVRLDPKTKEVVKGR*
Ga0104986_16004F008808AGAAGGMDRSIPPCPECGQRFNNVFEATDHLLEDDDDEFDPALILPNGARLMIGSLLRCLYKYADKPDQIKTITQSTYMTLFTAETQPAAMKDIVEEMIIESQMMDIDNEIEYFLGRNSNE*
Ga0104986_16007F009064GAGMIVQLNKDEVRVCTMLAVERWLTKFGSTDQPNYAQGKADGKLEPEINANIRANVCEWAVAKHYNMSWNVPCYPNALHKKRHSLPDVGENIEVRSVRTQDSIPFWAKDKGKVIIGTKCLDTEYYSEIEIFGVAYPEEFMKPEYYDSYINGWRIPISGFTHE*
Ga0104986_16009F018684N/AMRNIMANEDWKLQVSYKTPSGDMINVRANTADELSVLLEGVGDYSPQIAATQQKIVGSYALNPSLTSSSTTSTKPSTYSAPTPVSQASGTAAPVCKHGARIWREGISKASGKPYAFWACPSPQGTPDQCKPVN*

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