Basic Information | |
---|---|
Taxon OID | 3300007734 Open in IMG/M |
Scaffold ID | Ga0104986_1556 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 17436 |
Total Scaffold Genes | 22 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (22.73%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Associated Families | 5 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.953056 | Long. (o) | 127.81721 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F010688 | Metagenome / Metatranscriptome | 300 | Y |
F016803 | Metagenome / Metatranscriptome | 244 | Y |
F020137 | Metagenome / Metatranscriptome | 225 | N |
F061810 | Metagenome / Metatranscriptome | 131 | N |
F074803 | Metagenome / Metatranscriptome | 119 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0104986_155612 | F074803 | N/A | MIKIELTPQQFNQLYELLVIGMKAGNVNNMKVGIPLVETLEAAAKASQPTD* |
Ga0104986_155618 | F020137 | N/A | MSVHPSNIEAAKLLREHWPTCSTWNDDQILNWIGIFSSKKLFGIVKNDEGKCVGVGAVRFLNSIEESEDLNNNFPNGHIAWIEIAIGTEPYAVQTLWMAMMRLCSKNVTKLGGLRKGINRLYDFDRYFKLIMNERISYGRII* |
Ga0104986_15563 | F016803 | N/A | MINTLAKLRAAWTFTRHQRWVDPLPWSKPDAITLNNFFKSETGKKFKDALLNTVLMQNASAITDRNHLQYSSGFAMGQASLVKVIEMMADQESITGQEDDPDSATNT* |
Ga0104986_15566 | F010688 | N/A | MRPKTATIMVIAVGPKGHHREIGGAPSHSACGCDEADNNAPMIAIPVEALSTDTEDGQQASPEVGDEVLLDDVRGILKKLENGEAYVEIKTVNGMPAEYENTGDDAMEAKQTMDEKGMRKMAMMHDGEMES* |
Ga0104986_15569 | F061810 | GGA | LASSGSGGNVTPVDPPIMRRDLLQEDEFFVLQEDGTGKIVLSFGTYDRMATEQGTDLILTEASDKFILTVN* |
⦗Top⦘ |