Scaffold Ga0104986_1472

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1472
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 15496
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (88.89%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007913	Metagenome / Metatranscriptome	342	Y
F018159	Metagenome	236	Y
F038593	Metagenome	165	Y
F057985	Metagenome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_147211	F038593	AGGAGG	MSQSKPQFRTVDVSLSAPFEGWTATMKAEGVPARVFIELQSGNVERALTALERLIVKHNFLTEDGAPAENVLDAPMDALSDAITKWSDAVAALPPR*
Ga0104986_147212	F057985	AGGAG	MAANSLDRLTISFNVDSNYEALRLGFLQGANPAAYKRLLSIATLNAARTMVAPMRAEAPVGKTTKNPGRLRKSVTARRARFNTPAAVVGPRAGRNRAGANGGAWYRWFVTSGISGVRQTKNGPKAVKAVPANPFVTRVSKNEGRQRTAMEAMAKTVESFFNNGAFRATIMKFKRR*
Ga0104986_147217	F007913	GGAG	MPARSQNSEILARLDRIEKDLGTIKMELAETRGAYRLAKFVVALLGISGLGGVTAWLMGQK*
Ga0104986_14728	F018159	AGG	VSFNDATVIAGLAAHLSNATPPTGYSLRAVHSYPPDNLPVVPACVIVPGEDTVSYGASNRQVVLTLNATIYIQPQADLGRKYADLMVWRTWLRDSLINGVTLDGTDAVAQASVVSTSLGTDTWADQDYLTISASIEVACVEAIATSA*