Scaffold Ga0104986_1436

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1436
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 15031
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000545	Metagenome / Metatranscriptome	1038	Y
F000645	Metagenome / Metatranscriptome	962	Y
F001322	Metagenome	722	Y
F004115	Metagenome / Metatranscriptome	452	Y
F013317	Metagenome / Metatranscriptome	272	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_143610	F001322	AGGTGG	LTLWSPTYRVKVNGSTVTSASLSGLTITSGRFDIYSQPIAGYCNLSLLETNSSQVSYEINDSVTIEVLNASATYVFLFGGFITDLSVVVATSGSSALTQRINIIAVGALARLNRAVFSGNFAHQFDGDRILALLEDVVLGSWNEVPAALTWATYDATEQWEEALNTGLGEVDTPGNYELHSQTGVSGTVYDLVAAAATSGLGYIYEDSEGRIGYADSTHRTNYLSTYGYVDLDGNHAFGSGLQIVKRAGDVRNALTVLYGADSDQVATDSDLDSIALYGELAAEVETTLRHLADAEDQAAFYLSIRANPEFQLPTISFPIGSPEIDDADRNSLLGVFMGMPLNIVNLPANMGNGELQGFVEGWSWVASFNSLTLTLNVSPIAYSLQAMRWNDVPAVETFNTILPDLTWLNATIVA*
Ga0104986_143615	F013317	N/A	MKCRRTHYDRLLIEKRKWDYLADIRARTGSRTLYINATPKGIYQFDLGAINEPEWQLKLLPNKTDYSNGHSVEKLCGFLDIQHAELLLV*
Ga0104986_143618	F004115	GGA	LSLTRNHNQNQYCDYCKYRWGANKNGWDLRAMTPAVWKVQSETPLRKAQVRFYCQPCADEAQNWPDGTFYSLKEQLEDAISNFAGREKLNVELP*
Ga0104986_143619	F000645	GAG	MSNYLDDYVSVQDRLKEFINAYPDYRIKTHILAESLVANCDVYIIKTELYRTEADAHPWTTGLSSESKSKQYALELAETGSLGRALNLAGYFAKTKQSPKKAIETTKPALAEFIKEQRPNDPEPIVWDVAQITKEFGAEIIDEIPLCSGGDGPMVLKTGTKDGKEYRGWVCPTPKSGHPAKWMRVGSDGHWVFQK*
Ga0104986_143620	F000545	N/A	MKSDAHPFICSNCKLVTPHIELHKYDSTDIAEAPEEVWLVECQRCFMQRIIYPSDRVTAKEDDIVRCDQCGKWKMKAAKCRICRLAAGLESISERYWTGNETLERPYNANL*