Basic Information | |
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Taxon OID | 3300007734 Open in IMG/M |
Scaffold ID | Ga0104986_1422 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 14891 |
Total Scaffold Genes | 27 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (14.81%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (37.50%) |
Associated Families | 8 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.953056 | Long. (o) | 127.81721 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000847 | Metagenome / Metatranscriptome | 861 | N |
F003459 | Metagenome | 485 | N |
F006105 | Metagenome / Metatranscriptome | 381 | Y |
F007748 | Metagenome / Metatranscriptome | 345 | N |
F009057 | Metagenome / Metatranscriptome | 323 | Y |
F011581 | Metagenome / Metatranscriptome | 289 | N |
F014844 | Metagenome / Metatranscriptome | 259 | Y |
F035287 | Metagenome / Metatranscriptome | 172 | N |
Protein ID | Family | RBS | Sequence |
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Ga0104986_142211 | F011581 | AGG | MTYHSTRPAKALTNALERLMIAISAQELEENHVLLCEYRRACDLLGYDPAKAQWNNVEAVNASGLPNDDPHTVDYYPLLNPEE* |
Ga0104986_142214 | F007748 | N/A | VNLIETTIIGTVSAIVGGAVAWLTKGKFTADSLQVKQAQAVLAMWQATAEAQNKELTELRNELLVLRQRIESLESTIHALESENATLKAMQ* |
Ga0104986_142216 | F009057 | N/A | MATFRKFAFPNQATADKLLQALQPLDTAVPLGELDGLVCFDILFQDAYPDSLAAYIVWPAPCGVHSFLGWDAQYEADYQEFATPQSK* |
Ga0104986_142218 | F014844 | N/A | MLIGYGYGYPLSTLQGGGLSASAWAAFNARADADGATTAEAAVSDCLFGRFATIYNF* |
Ga0104986_142220 | F000847 | AGG | MSWIKIKQALLNLANSHPQVNSFGTGDPLAIGTDNTINLRTPSRERIVYPLVFADVQSATTDLGSLALVVGVYFSDRVESIASMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISALTNDPTQEWTLSTSVSLTRFVESRDDRTAGWVATLSFQIPYALRL* |
Ga0104986_142224 | F006105 | AGG | MIYLSPNTTNTIVVTWTQRASSGDRYILRLTNIAKNVSTDFTLLKSANLSNYTERYDKFSLAVGSLETGSYKYEVYDTNSTVAAAVAVVETGLAYVQVVSLTFNTYANTITYQPYAASAVRVFDSTFDPSFA* |
Ga0104986_14224 | F035287 | N/A | MRPAPPKKRPGVQIVGRVAGVNAALLLLEKPYRATELAEVLGIHIRIMYRILNDLRATGHLYSHRCHYWFDPKKNNDLQHLIPVKDPYA* |
Ga0104986_14225 | F003459 | N/A | MNQELVTIPKSDISKAEISAIATGLILRIEEGEVNPVAAHVRLKAIIKALEQVLRSTEQIVWDEAELNGRTFSAFGADIQLKEGAMTPDYSVDKEWANLNSMIKGREELLKAAFRNAGKMTVIDEATGEVVPVCPAKGTKPSIAVTFR* |
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