NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104986_1422

Scaffold Ga0104986_1422


Overview

Basic Information
Taxon OID3300007734 Open in IMG/M
Scaffold IDGa0104986_1422 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)14891
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (14.81%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Associated Families8

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.953056Long. (o)127.81721Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000847Metagenome / Metatranscriptome861N
F003459Metagenome485N
F006105Metagenome / Metatranscriptome381Y
F007748Metagenome / Metatranscriptome345N
F009057Metagenome / Metatranscriptome323Y
F011581Metagenome / Metatranscriptome289N
F014844Metagenome / Metatranscriptome259Y
F035287Metagenome / Metatranscriptome172N

Sequences

Protein IDFamilyRBSSequence
Ga0104986_142211F011581AGGMTYHSTRPAKALTNALERLMIAISAQELEENHVLLCEYRRACDLLGYDPAKAQWNNVEAVNASGLPNDDPHTVDYYPLLNPEE*
Ga0104986_142214F007748N/AVNLIETTIIGTVSAIVGGAVAWLTKGKFTADSLQVKQAQAVLAMWQATAEAQNKELTELRNELLVLRQRIESLESTIHALESENATLKAMQ*
Ga0104986_142216F009057N/AMATFRKFAFPNQATADKLLQALQPLDTAVPLGELDGLVCFDILFQDAYPDSLAAYIVWPAPCGVHSFLGWDAQYEADYQEFATPQSK*
Ga0104986_142218F014844N/AMLIGYGYGYPLSTLQGGGLSASAWAAFNARADADGATTAEAAVSDCLFGRFATIYNF*
Ga0104986_142220F000847AGGMSWIKIKQALLNLANSHPQVNSFGTGDPLAIGTDNTINLRTPSRERIVYPLVFADVQSATTDLGSLALVVGVYFSDRVESIASMGGVVSGSPTLGWQDNEDEVLSDQLQIAQDFISALTNDPTQEWTLSTSVSLTRFVESRDDRTAGWVATLSFQIPYALRL*
Ga0104986_142224F006105AGGMIYLSPNTTNTIVVTWTQRASSGDRYILRLTNIAKNVSTDFTLLKSANLSNYTERYDKFSLAVGSLETGSYKYEVYDTNSTVAAAVAVVETGLAYVQVVSLTFNTYANTITYQPYAASAVRVFDSTFDPSFA*
Ga0104986_14224F035287N/AMRPAPPKKRPGVQIVGRVAGVNAALLLLEKPYRATELAEVLGIHIRIMYRILNDLRATGHLYSHRCHYWFDPKKNNDLQHLIPVKDPYA*
Ga0104986_14225F003459N/AMNQELVTIPKSDISKAEISAIATGLILRIEEGEVNPVAAHVRLKAIIKALEQVLRSTEQIVWDEAELNGRTFSAFGADIQLKEGAMTPDYSVDKEWANLNSMIKGREELLKAAFRNAGKMTVIDEATGEVVPVCPAKGTKPSIAVTFR*

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