 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300007734 Open in IMG/M |
| Scaffold ID | Ga0104986_1387 Open in IMG/M |
| Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | Chunlab, Inc |
| Sequencing Status | Finished |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 14507 |
| Total Scaffold Genes | 21 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (61.90%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Gangwon-do, South Korea | |||||||
| Coordinates | Lat. (o) | 37.953056 | Long. (o) | 127.81721 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010530 | Metagenome / Metatranscriptome | 302 | Y |
| F013413 | Metagenome | 271 | N |
| F032279 | Metagenome | 180 | Y |
| F048984 | Metagenome | 147 | N |
| F055728 | Metagenome | 138 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0104986_138717 | F048984 | AGG | MAAQAYTDLFNTAINNLATTLNAVSGLVCITDPRNVQAPCILLDAMSFTAFNANIVDISIPVMVISLGPSNADAYRNALNVAAKVLAAKVAVTEGRPTTLSIGGVDYPALSLNIQMKASTT* |
| Ga0104986_13874 | F055728 | N/A | MRRSYDPNYGSREQLKDCHQAGMALMRERDALKAENAELLEQITELKALIAYITEGE* |
| Ga0104986_13876 | F013413 | N/A | VLRIWLGQWLQAVLLCDYCPLSCSKYKPKQKRENMTENEYDETFDMQMEREHQQTLARMQEFRLIGEQISKMPDTPPKVLEIEVRYLMGIISELEQRIKDLESEVRRFEILVTRAN* |
| Ga0104986_13877 | F032279 | GAGG | MHLIIKLTIAFALSAIGVGVSQIPAKVEFVAQSETPYEPVGGFAQTMADIYRYVPPVTTTTPVATVYKHGDCSWLPALALKAGWQPDQIPQLTKYALRESGCCPNRAGGDTVDKDCNITGVAEWSHRSDSGLMQINGVHWLPEHSKYDGLICKQMGICTQAPLLDAFTNLRAALLIYSRVGWSAWDMCNRTKTCK* |
| Ga0104986_13879 | F010530 | GAGG | MIDYPAILTKNYPTALWELSGTEYADLIWKCDEPKPTQAELDAQWPAVAYSNNIAQIEATRRTQYEAQSDGLFFEWQRGTNTQAAWEAAVQAVKDANPYPPAPVAPKKK* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |