Basic Information | |
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Taxon OID | 3300007734 Open in IMG/M |
Scaffold ID | Ga0104986_1381 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 14452 |
Total Scaffold Genes | 25 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (16.00%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 6 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.953056 | Long. (o) | 127.81721 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000557 | Metagenome / Metatranscriptome | 1026 | N |
F003267 | Metagenome / Metatranscriptome | 496 | N |
F004837 | Metagenome / Metatranscriptome | 421 | Y |
F012449 | Metagenome / Metatranscriptome | 280 | Y |
F024098 | Metagenome | 207 | Y |
F046337 | Metagenome / Metatranscriptome | 151 | N |
Protein ID | Family | RBS | Sequence |
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Ga0104986_138112 | F003267 | N/A | MKLIHYYHIYCGGGGQWQLIMNQHMMALCNYGLIEKLDEIRVGIVGPPEQRKAVKEILDNSLIKDKVKVVVTRTNAYEQATLTEMYKASQDEDAAYLYAHTKGSSDPSLINQLWCRSMIFFNVVAWERCLAELEKVDCVGAYWLTKEEFPQIADHNNPDGYPYFAGTFWWAKSSHIRELGEPVREHRWQAEHWIGKREGMTVYNSCKGWPAPDKFVITF* |
Ga0104986_138120 | F004837 | N/A | MTQTEYLLAAKHRHYWEQYQAALFMRLSPEAVHDLQTILVAHGRPNTNWWCADCVKSALSYIYQEADLFAEANHHTVTHALTNTPSE* |
Ga0104986_138121 | F012449 | N/A | MEVILTLLVSSLTALAIAEFYVLPQWWYQTWLGRHKPFSCVTCLTFWVAVALTLPTCDWMLAPVYGLASAGLTVVILQVTNR* |
Ga0104986_138125 | F046337 | N/A | EVFLALEDGNYAVGWLTKGQITFTNIHGEAWWTHEVAAWMYPKKP* |
Ga0104986_13816 | F024098 | N/A | MAISVLSGSPQAATPVYNKMLFKVSGSLTSGTNYRYVCDVKDAAGTTTLARLKCDKLPTTNYGFFDVSRVVETLIAPTVPTLTQAGFADHAGFYSGYRLTFMEEYGSTPVVQTGTTTNVTGNIVFAGNLEQLELADWSGGVYFNSFIFDGVSRALTTPTTRTVYGSDYGFLCMGSQSSPPFDQAEIAYPTRTFYVNIPASVSGSITRFGAGPMNLKALTSAQCSDNQAGSVGFPTAEGSSYTISFVDSFAGFSSVYYTYRIGPCQRFNSQPVHFINKYGGIDSYTFTLKNRKRANVQRDTFGYNSDVYATLTYDKVWAGSFDYVYALNSDWLTDAESEWLIEMVRSGQVWLEINGELVEGIVNANQYQFVTRRNDQLQQLQIEIAVAYKNNIL* |
Ga0104986_13819 | F000557 | N/A | MKLQDLTIDQFQRIAALELSPALNDADKRLGVVAIVEGVDVAIVRDMPAASLTKRYKAIIKEWNELPALAYKRKFKAGGKWWIPTVFTDELTAGQLIDLMEMNTTDERQLVQNLHRIMATLCREAAWLGWFPKKYDGASHQERAELMKKHAKIGDVWGVVSFFLLSSESYLQILSDYSKHMTKGMQGQ* |
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