Basic Information | |
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Taxon OID | 3300007734 Open in IMG/M |
Scaffold ID | Ga0104986_1356 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 14136 |
Total Scaffold Genes | 21 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (52.38%) |
Novel Protein Genes | 8 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (50.00%) |
Associated Families | 8 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.953056 | Long. (o) | 127.81721 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F000722 | Metagenome / Metatranscriptome | 922 | Y |
F008130 | Metagenome | 338 | N |
F010237 | Metagenome | 306 | N |
F013988 | Metagenome | 266 | Y |
F023058 | Metagenome | 211 | N |
F027510 | Metagenome | 194 | N |
F033421 | Metagenome | 177 | N |
F057151 | Metagenome / Metatranscriptome | 136 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0104986_135610 | F057151 | GAGG | MDIPQYFAQIDENNIVTNIAVVTHAFMQENPDRYPGTWVETFINLPNKTYAGMGYTYDETTKDFTPPPTIEPA* |
Ga0104986_135612 | F023058 | N/A | MAGVAVVASGNYDLEIDTGYMWDAFTLDDDLKGELNNTEYVLNGISQYASVMDGTIALTAKRGRQNTGDQFAYGTMSFTLNDTYADGVFNPFDTTSPYYDPANDQPGLAPLRQVRFSRYDSLNVKKYLWVGYIVNFDYTFTLGGLDTVSVNCADFSYQLGQTFLAEWNVTEELSSVRFNSMLDLPEVAYTGTRDIATGVATLGGAAAWTVANGTSVAAYANKINEAEQGRIFVDREGTIVFDSRIGTTLGNPVAEFHDDGTNIGYSAIDISFQADTVVNRASIQHAGASSPQVAEDLASQALYLIQTKSITDSLLHNDAAALTLAEYLINANPEPRFNFLGTEFPGTPTADQDTLALLDVGDLINIQKSITTSAGPTQFAQNLTIEGLEHRLTLSAGHAVTYFTAPTTIVYELILNDAVYGTLDAENVLG* |
Ga0104986_135614 | F033421 | AGAAGG | MADGIEARIEVYGLKEALKELNKIDKSLRREITKDYKRITAGLVSDIESAIPLNYPLSGWQRRWTLRGSYEVFPWPTEHKVKAYINTKPPKEFRSNTVNLTTFAIKWIGAAASFFDFSTSNAMGQHLTAKYGDASRVVWRQYEAHKEDLNSAMEQLVDRVGAATSRDLKAE* |
Ga0104986_135617 | F010237 | AGG | MAVPNYTDLFNEGFDDLVTKLSTVSGLQVNNDPRNITPPSVFVNIDSIDGYNYNVAKLNFTLQIITLGPGNLDAQKSLLNILAQIYALNIGVVSGRPTNLDIGGSTLPAYELSVSTVVQTA* |
Ga0104986_135618 | F013988 | AGGAGG | MAAYTVTHKQLTDNYAVLQLLTEAEIEVGASVVITNVDATFNGTYIVYALPQYAFMGVDNEGDLLFDPLVTIPNQVLYAKTASDVARTAASGTLTITQTCTWVTAAMLEDWLGIGTATAADAAFLTICASACSQFAWRRRMEAGYIDSLTTVPSQDVLLGTQMYGGSLYRQRGSVDQFASFQNMGVTPVMGLNGMIRQLLGIDRPQVA* |
Ga0104986_13565 | F000722 | N/A | MTDAQYPETGITEETRQMYPNTYSDKYNKVFKQFVDDIFRPNHLPKPEQPDHTILLDELTLMYDAHMTIGGEQNRFNASVIKAAINVIRAL* |
Ga0104986_13567 | F008130 | N/A | MPYGGNTDDKGDAMADAKTYIYEVYTTHLDSQQMVLVQIFRDPETDQVLHAQIAFKDAIGDSWQTPYQLEKK* |
Ga0104986_13569 | F027510 | N/A | MTVNNLPKFVILLMGLLCLTALMIADKIDMQSGVPMLTMIIGYSIGNGVNAKQGAESSNVFGKRNK* |
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