Scaffold Ga0104986_1299

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1299
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 13342
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002876	Metagenome / Metatranscriptome	524	Y
F004278	Metagenome	445	Y
F009805	Metagenome / Metatranscriptome	312	Y
F090274	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_129912	F090274	N/A	MGSDNIQTTTRKEDWDDFFAGWDDPQDAIEAMDSYAERVRVACELSGRQIKKAAKRLDESTQETVRVTVEFEFDR*
Ga0104986_129918	F002876	N/A	MACKKSELVSAINSFGSARATGDGNLIQFAANLIGQLIETLEFEPEDTEQAEEIVEIKDAEPV*
Ga0104986_12994	F004278	GAG	MMRTLFDDILKALVEWWKKVWFEAKLRARLDMIELENRAQAELELEKANRPVYIEHPIDPELQTGASKDLGGAMELKAPWYKNEDETKE*
Ga0104986_12995	F009805	GGA	MGEWMNSLQNRMSNAVDGDCFYLPTAMHLHAFMLLKEQNFADKNFKVEVKQ*