Basic Information | |
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Taxon OID | 3300007734 Open in IMG/M |
Scaffold ID | Ga0104986_1260 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 12823 |
Total Scaffold Genes | 26 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (19.23%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.953056 | Long. (o) | 127.81721 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F031094 | Metagenome | 183 | Y |
F038238 | Metagenome / Metatranscriptome | 166 | N |
F093854 | Metagenome | 106 | N |
Protein ID | Family | RBS | Sequence |
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Ga0104986_126011 | F038238 | AGGA | MKLDYQGRQLKLHQRATCLLELLKKAQSEQSRQEGLLAEWRAAGSYDNVRLFTHENNYLIRLAELNDIQKRILKSYYWLVVELYDITENFILPVNRIQ* |
Ga0104986_126013 | F031094 | N/A | VRLTNAQILNLKPKTMKPVLIYDNNFYPYNGQFIAQGGDNIYLDYEIDGTRFFLVKFRTIDLANNQIILSIVKL* |
Ga0104986_12609 | F093854 | AGAAG | MSYIDNTKSNMMREIYILELENEMLRKQITKLKIELNELLDSTKRTEAKIEQERKGTIG* |
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