Scaffold Ga0104986_1252

Overview

Basic Information

• Taxon OID: 3300007734
• Scaffold ID: Ga0104986_1252
• Source Dataset Name: Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Chunlab, Inc
• Sequencing Status: Finished

Scaffold Components

• Scaffold Length (bps): 12625
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (22.22%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location

• Location Name: Gangwon-do, South Korea
• Coordinates
  • Lat. (^o): 37.953056
  • Long. (^o): 127.81721

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006018	Metagenome / Metatranscriptome	383	Y
F007859	Metagenome / Metatranscriptome	343	Y
F008688	Metagenome / Metatranscriptome	329	N
F009135	Metagenome / Metatranscriptome	322	Y
F010081	Metagenome / Metatranscriptome	308	Y
F013524	Metagenome / Metatranscriptome	270	Y
F014128	Metagenome / Metatranscriptome	265	Y
F019476	Metagenome / Metatranscriptome	229	N
F041152	Metagenome / Metatranscriptome	160	N
F099167	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0104986_125213	F099167	N/A	MLLTFYNVAGSMSLVMNSKILKRTIDIAKAMCPLNIEHRCSHIAFLIRCGKIVHIGTNSCKSHPKTLEYDYKNHQLVGLHAELSVCMKSGREDLSDFKMVVLRVDRTGKLNNSKPCCGCQSVVKQFNVGEVWYSDAKGEIVKN*
Ga0104986_125217	F019476	N/A	MNNNKTKSAKVILDIEWEAVDDSDLPALWDWKRIKMPMDLTKVKYLGIHTSNGPENVSNWMGN*
Ga0104986_12522	F014128	N/A	MEYLQKFGIQIGFLFSGLFGAILMTTKSDKTDVKSVVLSLIGGMAAANYLTPVLVELLNITNIKNQNGIAFIAGFIGLKLVEIISENFIEKLGGNKKPTQKPKRRKK*
Ga0104986_125220	F009135	N/A	VLSLSQTLYITGKIMISNPRYYLKINLPPNFNDLDAEVIKKDLMTYMNSRNQWGALYGPKSSKKGITIEKVRYRTNED*
Ga0104986_125221	F013524	N/A	MKTNKEVISRLRQFTSYNCNNLLDAKLCEDIRYLCDEVERFSQEIVKANNHMDEDHITIQRYKKKLSKYESI*
Ga0104986_125222	F008688	N/A	MNRFNKIIVGGLTAILLTAMTVEPPKLKVYLITSYRGSDLTIEKVYLKKENAEKYRDMYKESHNYSVEERELTE*
Ga0104986_125223	F007859	GAG	MKNLLIIALLCTGCTSGMYLRYSYNKALENLPPCSRVHAINNNYITYSMVENSTNSVYTVYTNYYRAYYNCDGKIINTTKN*
Ga0104986_125224	F010081	N/A	MKEQVDSIIKKHCLKMQEVDKNKSIPMTVKDLDHIVYDMYRELYGLRDIRASNYHLNNFTADDKKGHCC*
Ga0104986_12526	F041152	N/A	MNIVDYIVQNWDTLPKSKFDDDIVVIFKEIENWDGGYGHHSYEGVGVDKNGNVTWCYSSGCSCNGGPSTEIKKDLKIFIVNDGIDLNVDPSTINFKSLEVEFDSY*
Ga0104986_12528	F006018	N/A	MKKYNIKTNDIGMCMSVRCDFYQTCTNNSVNMFYKTQRKFEPVLDEGVCLSYDSGKNTTDYPDNCYPNLLKKIYVN*