Basic Information | |
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Taxon OID | 3300007734 Open in IMG/M |
Scaffold ID | Ga0104986_1241 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 12513 |
Total Scaffold Genes | 15 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (73.33%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.953056 | Long. (o) | 127.81721 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004668 | Metagenome / Metatranscriptome | 428 | Y |
F038213 | Metagenome | 166 | Y |
F046346 | Metagenome | 151 | N |
F077011 | Metagenome / Metatranscriptome | 117 | N |
Protein ID | Family | RBS | Sequence |
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Ga0104986_124111 | F038213 | GGAG | MTRSQVDAIIDRLDAQSAKIDRLQSEIDQMKGGLTVLKGLGALLGVGGIGTLLAWFQSQSGK* |
Ga0104986_124113 | F004668 | AGGA | MEGLMARTEDHIEDIHEQGWTRVDTAPEEWVALVPNEDHSAFGGTLWKRGENGVDYSEGCTAAHPISAALSFEAAARAVAVLIKKENAG* |
Ga0104986_124114 | F046346 | N/A | MKYRIKSQLYSDAEAQKKVGAILDDCGPSSAAAAAAYVHGYAPDFSAADGVAAKQFATGFKEKQGVSDNGSSLADLAKTVRYMGCKARMPDDWQDVLASVKGGAAGLLWVQGPIGYPKQALSKWHRNWVKYWEKKDPAVIAAGYGHMTSFAYDTEAQTFVFADPTFDERDPKEQYAVTVTEAELKAIASGKPGSPASHVVIVTKKENQ* |
Ga0104986_12414 | F077011 | GAG | MKDLTILDAMAERLKSVEPPVGYSLRNVYATPPESLPVVPAIVFFPGDDTVAIGSANRSVTLTVNAVLYLTPIPRMDQKYRDLYTWRSWMRDAFNADVTIDGNAAQVTVTSTTLGTDTYADQDYLTVTAAVEVLVYEAIAYSE* |
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