Basic Information | |
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Taxon OID | 3300007734 Open in IMG/M |
Scaffold ID | Ga0104986_1186 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 11885 |
Total Scaffold Genes | 22 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (63.64%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (57.14%) |
Associated Families | 7 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.953056 | Long. (o) | 127.81721 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001459 | Metagenome / Metatranscriptome | 690 | Y |
F003112 | Metagenome / Metatranscriptome | 506 | N |
F004760 | Metagenome / Metatranscriptome | 424 | N |
F010603 | Metagenome / Metatranscriptome | 301 | Y |
F039992 | Metagenome / Metatranscriptome | 162 | N |
F065530 | Metagenome / Metatranscriptome | 127 | Y |
F086661 | Metagenome | 110 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0104986_118611 | F004760 | AGGAG | MPVYQYEDTRNGSVVELERRVDERDSVPRHLKRFTVPQKLTLVGVGEPLENPIGVNQTNLMKGYYRQEQKLGSRFKSRYTPDQIKRAAASQRS* |
Ga0104986_118612 | F010603 | AGGAG | MANEFQRSPIKAKNKAVRIDSQNFTNVIEFTAASSGGTVNTVATAPASLNVTLNGTSYRIALHS* |
Ga0104986_118616 | F086661 | N/A | MKLKNIIKHLDGTIEIRDERTLAEAQEQRIGYAKEDCTKHLYESGIDTATQQNAALGIYEPARCEAIKNYIAACRNEYLRCKGLILAATTNDEADAVQFIPPSVPENL* |
Ga0104986_118617 | F003112 | GGAG | MCKRLAIWLTNLSLRFLMTAQEYACFKEALKFATENNQMVKETKYIGKVKHLLSVNRSIKRIVEEGRNRDEVTDAVVHLAVALKYLEGRGRE* |
Ga0104986_118618 | F039992 | AGGA | VSNDEINDIRDRLALNSERLARIEERQLTLMGMLEKSLSSFGDLANRVTALEHLKTKMLLVAGAIGAIVSLAWDILKSRFSGG* |
Ga0104986_11863 | F065530 | N/A | VIGAILNIIASVLRLIPGWREKRVDRIEGEWRNNRNAIDSDLGPRPWWLRHDSDSGDEYDRGR* |
Ga0104986_11867 | F001459 | N/A | MRTIRAILAFLRNHQWVNEPAWLEEDEKAWTAFLGTPTGKKLSLILLNLTLRHNASAVMKNGDRLAEACGWAKGYRGCVATLESLATQKLNSAIPGYGDGEDEPVAN* |
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