NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0104986_1186

Scaffold Ga0104986_1186


Overview

Basic Information
Taxon OID3300007734 Open in IMG/M
Scaffold IDGa0104986_1186 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterChunlab, Inc
Sequencing StatusFinished

Scaffold Components
Scaffold Length (bps)11885
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (63.64%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea

Source Dataset Sampling Location
Location NameGangwon-do, South Korea
CoordinatesLat. (o)37.953056Long. (o)127.81721Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001459Metagenome / Metatranscriptome690Y
F003112Metagenome / Metatranscriptome506N
F004760Metagenome / Metatranscriptome424N
F010603Metagenome / Metatranscriptome301Y
F039992Metagenome / Metatranscriptome162N
F065530Metagenome / Metatranscriptome127Y
F086661Metagenome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0104986_118611F004760AGGAGMPVYQYEDTRNGSVVELERRVDERDSVPRHLKRFTVPQKLTLVGVGEPLENPIGVNQTNLMKGYYRQEQKLGSRFKSRYTPDQIKRAAASQRS*
Ga0104986_118612F010603AGGAGMANEFQRSPIKAKNKAVRIDSQNFTNVIEFTAASSGGTVNTVATAPASLNVTLNGTSYRIALHS*
Ga0104986_118616F086661N/AMKLKNIIKHLDGTIEIRDERTLAEAQEQRIGYAKEDCTKHLYESGIDTATQQNAALGIYEPARCEAIKNYIAACRNEYLRCKGLILAATTNDEADAVQFIPPSVPENL*
Ga0104986_118617F003112GGAGMCKRLAIWLTNLSLRFLMTAQEYACFKEALKFATENNQMVKETKYIGKVKHLLSVNRSIKRIVEEGRNRDEVTDAVVHLAVALKYLEGRGRE*
Ga0104986_118618F039992AGGAVSNDEINDIRDRLALNSERLARIEERQLTLMGMLEKSLSSFGDLANRVTALEHLKTKMLLVAGAIGAIVSLAWDILKSRFSGG*
Ga0104986_11863F065530N/AVIGAILNIIASVLRLIPGWREKRVDRIEGEWRNNRNAIDSDLGPRPWWLRHDSDSGDEYDRGR*
Ga0104986_11867F001459N/AMRTIRAILAFLRNHQWVNEPAWLEEDEKAWTAFLGTPTGKKLSLILLNLTLRHNASAVMKNGDRLAEACGWAKGYRGCVATLESLATQKLNSAIPGYGDGEDEPVAN*

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