Basic Information | |
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Taxon OID | 3300007734 Open in IMG/M |
Scaffold ID | Ga0104986_1100 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Soyang, Gangwon-do, South Korea - SYL_2015Jan |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Chunlab, Inc |
Sequencing Status | Finished |
Scaffold Components | |
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Scaffold Length (bps) | 10828 |
Total Scaffold Genes | 18 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (61.11%) |
Novel Protein Genes | 6 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Associated Families | 6 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Viral Communities From Lake Soyang, Gangwon-Do, South Korea |
Source Dataset Sampling Location | ||||||||
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Location Name | Gangwon-do, South Korea | |||||||
Coordinates | Lat. (o) | 37.953056 | Long. (o) | 127.81721 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000888 | Metagenome / Metatranscriptome | 847 | Y |
F001150 | Metagenome | 764 | N |
F002644 | Metagenome / Metatranscriptome | 540 | Y |
F011486 | Metagenome | 290 | Y |
F014973 | Metagenome / Metatranscriptome | 258 | N |
F097197 | Metagenome | 104 | N |
Protein ID | Family | RBS | Sequence |
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Ga0104986_110013 | F097197 | GAGG | VPVQTTIKVAGVKDAINGLKKLDPELQKEFKAKATEIAQPAIDAGKAAYEPLENEQHPYALSGMSRSWTSDGKKIFPFKLDKAIKGVQMKFDTRRKAVGVIMILQKDVATAVWETAGRRNTNKLGASLGFVAKDQTRILKPAIEKDIAKVEREIEKITKDAIRTVQRGI* |
Ga0104986_110014 | F014973 | AGGA | MKLKLKVDLNNGSAPVEMTTNMFVICEWERTENRKISDGKGIGYTDLVCWAFHLLKLNGETLPPNYRDWVKQNPNMTIEAIDETNPNPTA* |
Ga0104986_11004 | F001150 | N/A | VLTKHEKSRIAVAIAKSQASANAKWTPEQQQQVDAAIVKMARMKPRFTADEVWYELGASFPVTKGMTARLMVAERRGVIKNTGEITYAKRGGQHDHAQRLTIWQSL* |
Ga0104986_11005 | F002644 | AGG | MTENIDPRTDPQFKALMQVMNDITQNKVPFYEPHELAARSTLRALQHQIDDHNVLDDSDLIDTLNQARIEIKYLCSIITDLHERLKQRDVELGIKQLRLNENEVEIQRLENMVHRAY* |
Ga0104986_11007 | F011486 | N/A | MTKPYVITAQPVVKAPLAGMAKWVELAVKHSDGSLWNNGIWVVRDVRHKPGVISNHARGLATDLSYRWLAQKQFGRQDGRKQSLAYIVKLLEHADTLGIQLVIDYALKRSWKCDRGTWQPLPSVDDGDWYHIEVEPRLAHDVEATKQAFQAVFGVSPKAAPQSV* |
Ga0104986_11009 | F000888 | AGG | MAIQYFAQIDENNVVINVHVVTAEFMAANPERYTGTWVETFFDTPNKTYAGIGYTYNYETQDFTAPVIKVGIE* |
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