Scaffold Ga0102859_1000164

Overview

Basic Information

• Taxon OID: 3300007708
• Scaffold ID: Ga0102859_1000164
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1371B-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14371
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (78.26%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2342
  • Long. (^o): -123.9167

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004670	Metagenome	428	Y
F005027	Metagenome / Metatranscriptome	414	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102859_100016415	F004670	AGGA	MTYTELPLFRATDPETSRQVNPIRVGTHRAILLKQYFDATLGLTDEEAGARAALAGHEIKGYWKRCSDLRTLGLIQDLGVRRAVLSGSQAIVCAITQTGLDMVRGWA*
Ga0102859_100016418	F005027	N/A	MEASLQITKEKMETSTGELIAKLTNISHNLALELRFKEASVIMEAVGALHALPNIAETIRDSWHPSLNSSGPSKGLSYLSSAKLVGADE*