Scaffold Ga0102823_1045340

Overview

Basic Information

• Taxon OID: 3300007692
• Scaffold ID: Ga0102823_1045340
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.743
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1183
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2
  • Long. (^o): -123.94

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000962	Metagenome / Metatranscriptome	820	Y
F014847	Metagenome / Metatranscriptome	259	Y
F028145	Metagenome / Metatranscriptome	192	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102823_10453402	F014847	AGG	MEYESNADILRDLMNQIHTLHKENAKLRQEVEQLNDLIKELNRKLKSIQALFL*
Ga0102823_10453403	F028145	N/A	MKLFCIFIINLAVSLFASILLYKLFKVDVSPTIISIGLIVTYMCLPQRFHDWISEK*
Ga0102823_10453404	F000962	GGA	MNIHVPDEIKAKYPHMEFRGKQRQLNDRTVIEAYNNATNQTFHYSFDEDFFWFVGQIPDWKLTKVS*