Scaffold Ga0102862_1109524

Overview

Basic Information

• Taxon OID: 3300007670
• Scaffold ID: Ga0102862_1109524
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449C-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 695
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F011938	Metagenome / Metatranscriptome	285	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102862_11095241	F000671	GAGG	MEKILCYSCNKSKNKLDVKKSSLLPINLFICETCSSSKFEPRWVIILAGRSQGPDYVKEFIVKRRYV
Ga0102862_11095242	F011938	GGAGG	VKEYYDVIHVVYIHSEDCHGTVEKLGAWASVVKYNKDGMEYTELMENEDFSIIDEIVFKHIEESE*
Ga0102862_11095243	F000473	N/A	NKKDINEHFKYGVNEWTGEPNKPVFYTEEMRKAVHQVKKPSMLLMDIVMYPEFLALRLYEDNFLQFEGTKKEMVIDYVGKIKRLLESYGVRCELEGKPSERVL*