Scaffold Ga0102910_1012982

Overview

Basic Information

• Taxon OID: 3300007667
• Scaffold ID: Ga0102910_1012982
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1558A-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1862
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2763
  • Long. (^o): -124.0055

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000852	Metagenome / Metatranscriptome	860	Y
F038241	Metagenome / Metatranscriptome	166	Y
F088889	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102910_10129821	F088889	AGGCGG	MSKTPEQKVAEQLTNLTEDHWFNAASLARYLTDQPYYTTDRIMELVAQIIKWGGRRHEDELTPS
Ga0102910_10129822	F000852	AGGA	MTTKREYLKQQGITVGVRGRFSGAAKVALQEAVSKGVTVTDEKANKAK*
Ga0102910_10129828	F038241	N/A	LDQMSNAVHDAKLFYIMKSDVEQVDKDPLVEGLLKANDFLQGLWAEGYFD*