Scaffold Ga0105536_100029

Overview

Basic Information

• Taxon OID: 3300007657
• Scaffold ID: Ga0105536_100029
• Source Dataset Name: Human stool microbial communities from NIH, USA - visit 2, subject 158479027 reassembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Baylor College of Medicine, J. Craig Venter Institute (JCVI), Washington University in St. Louis
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 128549
• Total Scaffold Genes: 172
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (16.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human → Human Microbial Communities From The National Institute Of Health, Usa, Hmp Production Phase

Source Dataset Sampling Location

• Location Name: USA: Maryland: Natonal Institute of Health
• Coordinates
  • Lat. (^o): 39.0042816
  • Long. (^o): -77.1012173

Associated Families

Family	Category	Number of Sequences	3D Structure?
F051210	Metagenome / Metatranscriptome	144	Y
F071326	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0105536_100029124	F071326	N/A	MADMVSKNLDKANKLYSIGMKNIKLQLKLLGTEFVVLRPNEKSKWKNVFGGSYSSSSTLENDYDQFTTKLILNQNELRDVWNRNRDNLEVYTDDGSLEVGDELQYTRGKYTFRFKISLKMGYSEVAEVFYVYTLNSIVETLDM*
Ga0105536_100029141	F051210	N/A	MNTQYLQMMQTPSMMEALINSSVSTEDANLRSREYAKMFSRNDEMKDLFGLGNAGNLLQKTFSGYAETPLLSTQYFNASVASYVSSFAGYMSIERDFDQPNGLFYWFDVLGVTDMRSVIPNLGPDNYQDIQAMGNFTLNITPTANTDYSSLIGRKIIPGTVRVKIATATEKFELIDNGQGAFMAVAGKITNGTINYLNGRVEFTLATALAGDAATESITIVGKEDVTGTPCNTIGASNAHANDKRFIAKMQQLGLATVPDMLVAEYNIAALGAMKKATGSDMATFLFTKLRELYTKVINYKLVSTLEEGYNGNVMSDLDLTQGAMTGQFMDYRSRVDLFDAYLINVESALATKAVKGVDVTAYVAGNMASNQFQKGGMIGKWERNTKMTYINDLLGWYNGIPVLRSTDIAEAQGEGTFYAIHKTKDGQMAPLARGIYMPLTDTPTIGNYNNPTQMASGIYYQEGTKYMAPELVQKVTFKFGI*