Scaffold Ga0070751_1206213

Overview

Basic Information

• Taxon OID: 3300007640
• Scaffold ID: Ga0070751_1206213
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 762
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.149325
  • Long. (^o): -75.288339

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022198	Metagenome	215	N
F030097	Metagenome	186	N
F044196	Metagenome	155	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070751_12062131	F044196	N/A	NAKILINQMIGSHQGTPEAATQYAIYQLGLPQDVASSLIQYANQLNK*
Ga0070751_12062132	F030097	N/A	MIQTIETAENQSKVSSCMGFVASGAARDAYRRLLTASTVGESKGEQRKSPFSRTTKEKVKK*
Ga0070751_12062134	F022198	AGGAG	MKTIQQYRKDHPQLSEEQVHSAYHITEIDAPEFSVSGFTLIARGKCLAIHENGNIAPLR