Basic Information | |
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Taxon OID | 3300007640 Open in IMG/M |
Scaffold ID | Ga0070751_1020388 Open in IMG/M |
Source Dataset Name | Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3183 |
Total Scaffold Genes | 11 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (45.45%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Delaware Bay | |||||||
Coordinates | Lat. (o) | 39.149325 | Long. (o) | -75.288339 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F007025 | Metagenome / Metatranscriptome | 359 | Y |
F013505 | Metagenome / Metatranscriptome | 270 | Y |
F057999 | Metagenome | 135 | Y |
F091611 | Metagenome | 107 | N |
Protein ID | Family | RBS | Sequence |
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Ga0070751_102038811 | F007025 | GGAG | MILIDFFSEDCCKGTELVEGWYWYDDADDEAVGGPFASEEAALKAAFDGHGW* |
Ga0070751_10203882 | F013505 | GGA | MKHYPSYEARLEADRQAQHSGYGIQQYFCADGSRKWEAYGWERITELQIHTTSYGIFDHKWQAERYFNNILHG* |
Ga0070751_10203885 | F057999 | N/A | MTDRLIFPMAAFSPTQGQWWRSCAPKDTERRVKLVASCQGFWLWTADFRDARTSKLLTSKFFCTKPSSDEPVALFENADDRQRWMDKQAA* |
Ga0070751_10203887 | F091611 | GAGG | MPYSLIVDDEWGVPYALKTFETIQEVHDEIRTMDEALDHVGPSAAYAIRCIIGQLWQIVHEAEEEPETILDRPAF* |
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