Scaffold Ga0070751_1020388

Overview

Basic Information

• Taxon OID: 3300007640
• Scaffold ID: Ga0070751_1020388
• Source Dataset Name: Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3183
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location

• Location Name: USA: Delaware Bay
• Coordinates
  • Lat. (^o): 39.149325
  • Long. (^o): -75.288339

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007025	Metagenome / Metatranscriptome	359	Y
F013505	Metagenome / Metatranscriptome	270	Y
F057999	Metagenome	135	Y
F091611	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0070751_102038811	F007025	GGAG	MILIDFFSEDCCKGTELVEGWYWYDDADDEAVGGPFASEEAALKAAFDGHGW*
Ga0070751_10203882	F013505	GGA	MKHYPSYEARLEADRQAQHSGYGIQQYFCADGSRKWEAYGWERITELQIHTTSYGIFDHKWQAERYFNNILHG*
Ga0070751_10203885	F057999	N/A	MTDRLIFPMAAFSPTQGQWWRSCAPKDTERRVKLVASCQGFWLWTADFRDARTSKLLTSKFFCTKPSSDEPVALFENADDRQRWMDKQAA*
Ga0070751_10203887	F091611	GAGG	MPYSLIVDDEWGVPYALKTFETIQEVHDEIRTMDEALDHVGPSAAYAIRCIIGQLWQIVHEAEEEPETILDRPAF*