Scaffold Ga0102865_1145332

Overview

Basic Information

• Taxon OID: 3300007639
• Scaffold ID: Ga0102865_1145332
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1449C-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 709
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2327
  • Long. (^o): -123.9168

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023107	Metagenome / Metatranscriptome	211	Y
F066766	Metagenome / Metatranscriptome	126	N
F091353	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102865_11453321	F066766	N/A	TLKEVELGYTEYTLAKLVRANYGDTAVEYLVGRLSSVVTESQLKVLIDYEKGVNG*
Ga0102865_11453322	F023107	AGG	MDNILPSRTVMFVGDYFTLMTTIVLDEKLRDENETDNDFAVRVASVFMNEYYGFDVASVANSIGVVDEGGMVEEDD*
Ga0102865_11453323	F091353	GGA	MIKTSIDLFDETCNAIAGGELDRQLIPLKKLIEERLSLTRADADVKDFVVGDKVVLNDKCGTKYLIGEEGTVVAIRRSKISISFDKPKGRFARTNSEGGTYSANVVVP