Scaffold Ga0102906_1001508

Overview

Basic Information

• Taxon OID: 3300007637
• Scaffold ID: Ga0102906_1001508
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1556A-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8255
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (20.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → unclassified Thermoplasmata → Thermoplasmata archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2022
  • Long. (^o): -123.941

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011190	Metagenome / Metatranscriptome	294	Y
F068714	Metagenome	124	N
F070560	Metagenome / Metatranscriptome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102906_100150810	F068714	N/A	MKILEKNKSHIIYKEDNGIVSIVPNTPYFHMKVVEWKNERIKFDLPIEGIEVLETFNGMIFNISLNGKTITTRPNMADAVVKSFTDTNSLYEIFDKYNNNKYNIQLLKGVLEKHGDRIRILPAGFVIDDIFLVDRTGVCWIWDSDRQEADKTHRTNLGSGAVCIVVDKTQRLKLKTSNGLVEIDEMGYIILSKIEFLMDPNLNDTVFTHQIPKKVLKILERNKAENLV*
Ga0102906_10015085	F011190	N/A	MCELIMNFFRNLKKSFDGKDRLRNINQCMTCGKPSFFNSCLECETSDAYEGWDKK*
Ga0102906_10015088	F070560	N/A	MIMTNQTQQFKQLVSSAKPEAQIPKAESMVTVSSLMTTADHAQFNKGLVSLFVDVPHHVSGESQIFSVRPQQMVPRSAVIQRDESSQLVGISAVSGG*