Basic Information | |
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Taxon OID | 3300007623 Open in IMG/M |
Scaffold ID | Ga0102948_1016508 Open in IMG/M |
Source Dataset Name | Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_A_H2O_MG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2525 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (66.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration. |
Source Dataset Sampling Location | ||||||||
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Location Name | South San Francisco, USA | |||||||
Coordinates | Lat. (o) | 37.4962 | Long. (o) | -122.1329 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F007835 | Metagenome / Metatranscriptome | 344 | Y |
F014153 | Metagenome / Metatranscriptome | 265 | Y |
F016625 | Metagenome / Metatranscriptome | 246 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0102948_10165084 | F007835 | GAGG | MPFGPTTLRNEREEFVLQKIEYYKVNEYMGRSNWKRHYFDTYKEAVKMFKKLKQEKRKILIYACRNDELGELSTGLNDRFIK* |
Ga0102948_10165086 | F014153 | GAG | MYTKEQIFTEFKDVTKKDKSKKKESYTNRIAYLTALKEDMIKVPKNFSNLNLTTDQLQNLIDDWSAPKPIDAFYKRIFNMTYAEKKAEEEAEYFDLSKKEKVYKKKEQVDTIQ* |
Ga0102948_10165088 | F016625 | N/A | MRTMMMITIAVLMTMTMAKSDETIDTKVKTFIFNEVNEIKEYQKASWQEGKEQNAKNWAKIKALFTKVKDNVTQD* |
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