Scaffold Ga0102948_1016508

Overview

Basic Information

• Taxon OID: 3300007623
• Scaffold ID: Ga0102948_1016508
• Source Dataset Name: Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_A_H2O_MG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2525
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water → Salt Pond Water, Soil And Salt Crust Microbial Communities From South San Francisco Under Conditions Of Wetland Restoration.

Source Dataset Sampling Location

• Location Name: South San Francisco, USA
• Coordinates
  • Lat. (^o): 37.4962
  • Long. (^o): -122.1329
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007835	Metagenome / Metatranscriptome	344	Y
F014153	Metagenome / Metatranscriptome	265	Y
F016625	Metagenome / Metatranscriptome	246	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0102948_10165084	F007835	GAGG	MPFGPTTLRNEREEFVLQKIEYYKVNEYMGRSNWKRHYFDTYKEAVKMFKKLKQEKRKILIYACRNDELGELSTGLNDRFIK*
Ga0102948_10165086	F014153	GAG	MYTKEQIFTEFKDVTKKDKSKKKESYTNRIAYLTALKEDMIKVPKNFSNLNLTTDQLQNLIDDWSAPKPIDAFYKRIFNMTYAEKKAEEEAEYFDLSKKEKVYKKKEQVDTIQ*
Ga0102948_10165088	F016625	N/A	MRTMMMITIAVLMTMTMAKSDETIDTKVKTFIFNEVNEIKEYQKASWQEGKEQNAKNWAKIKALFTKVKDNVTQD*