Scaffold Ga0102871_1018345

Overview

Basic Information

• Taxon OID: 3300007620
• Scaffold ID: Ga0102871_1018345
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1546C-02
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2110
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2311
  • Long. (^o): -123.8825

Associated Families

Family	Category	Number of Sequences	3D Structure?
F070949	Metagenome / Metatranscriptome	122	N
F075708	Metagenome / Metatranscriptome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102871_10183452	F070949	AGG	MSKNNASESYTGTIDGFLEHCSKLDTNEVEQQIKREEKEECLKIIMTDCECSLEEAEEIYSEIALAEVKESMEQLLKDGIVKVSGYNDEGEPLFMLTELGKQIQKELGNQ*
Ga0102871_10183455	F075708	N/A	ISNQGVDDDDFRPDVRSRNLKNLISDTTYDQNVYLDLAKEVLKNSDVSNMEDIIKGALIITQDNGNPYTVIRRQANQLQGTNFNDILLTSLKMYNAKYNPNYMQQRSFGPDFAGIINKFTPRNIQDVVKVLSINPRAKDMVDMIQKYRRDLYESKKMSIKYRDFYKF*